RnoINT0048582 @ rn6
Intron Retention
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7378491-7379033:-
Coord C1 exon
chr16:7378920-7379033
Coord A exon
chr16:7378680-7378919
Coord C2 exon
chr16:7378491-7378679
Length
240 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
3' ss Seq
ATCTGCTCTCATTCCCACAGGTG
3' ss Score
12.69
Exon sequences
Seq C1 exon
GTACTACTGGACAAATAACGACCTGTACATCCGTGCTGTGAATGCGGAGTTCATCTACGGCTACGAGTACCTCGGCAACAGTGGGAGGCTGGTGATCACACCCCTCACTGACAG
Seq A exon
GTGAACCCTCCCAGCTGGGTCGGCCAGCCCCGTGGATGGCCAAACAAAGCTCGGCAAGGCTCGAAAATCACCACCCAGGCAGCCAGTCCCAGGCTCCAGTCCCAACCCTGGCGGTCAGGACTGGCACACTTGTGCCTCAGAGGTGTGAGGAGGAGGAAGAGCTGCTGGTCCACAGAGTCCTGAAGGAGGAAGCACCCCAGGCAGGCTGTGGCCCATTTCTATCTGCTCTCATTCCCACAG
Seq C2 exon
GTGCTATCTGACCCTGACAGGAGCCTTGCACCTCAAGTTTGGAGGTGCCCCAGCTGGCCCAGCTGGCACAGGGAAAACAGAGACCACAAAGGACCTGGGGAAGGCCTTGGCCATACAGACAGTTGTGTTCAACTGCTCCGACCAGCTCGACTTCATGGCCATGGGCAAGTTCTTCAAGGGTCTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914:ENSRNOT00000035009:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(8.8=48.7)
A:
NA
C2:
PF127742=AAA_6=FE(29.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAATAACGACCTGTACATCCGT
R:
CTGGCCAGACCCTTGAAGAAC
Band lengths:
293-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]