HsaINT0049833 @ hg19
Intron Retention
Gene
ENSG00000115423 | DNAH6
Description
dynein, axonemal, heavy chain 6 [Source:HGNC Symbol;Acc:2951]
Coordinates
chr2:84851589-84852187:+
Coord C1 exon
chr2:84851589-84851744
Coord A exon
chr2:84851745-84852025
Coord C2 exon
chr2:84852026-84852187
Length
281 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TAATGCATTGCTTTCTTCAGGAT
3' ss Score
7.23
Exon sequences
Seq C1 exon
GTGGAGACAGTTGAATCTTTTGACTGGCAGAGACAACTGCGCTATTACTGGGATATAGACCTGGATAATTGTGTGGCTAGAATGGCGCTCTCTCAGTACACTTATGGCTATGAATATTTGGGTGCATGCCCAAGATTGGTTATTACTCCACTCACA
Seq A exon
GTAAGTTATTGATCACTTGGGTTAATATTGACACAAGAGTGCTTTTCAATCAAAAGTCTTGAAAAGTTTCATATGACATTAACTCTTGAAAGAATTTATTATGAATACATCTTTGTAAAGCAAATATTTGCATTATTTAATTATGTGCATGGATCTTTTGGTGTATTTCAATTGCTATATTTTTCATAGAAAATAATAATCCTTCCCCCATAGAGAGGAAATGCCTTAATTTGTGGCCAGAGTTGGTTCCCTTCATATTGATAATGCATTGCTTTCTTCAG
Seq C2 exon
GATCGCTGCTATCTTTGCCTCATGGGAGCTTTGCAGCTTGACCTTGGGGGTGCACCAGCTGGTCCTGCTGGCACTGGGAAAACAGAGACTACCAAAGATCTGGCAAAAGCTCTTGCCATCCAGTGTGTGGTCTTTAACTGTTCAGATGGTTTGGACTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115423-DNAH6:NM_001370:28
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(7.4=32.7)
A:
NA
C2:
PF127742=AAA_6=FE(22.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGACTGGCAGAGACAACTG
R:
AGTCCAAACCATCTGAACAGT
Band lengths:
295-576
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)