GgaINT0008939 @ galGal4
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4885927-4886785:-
Coord C1 exon
chr15:4886602-4886785
Coord A exon
chr15:4886062-4886601
Coord C2 exon
chr15:4885927-4886061
Length
540 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAT
5' ss Score
7.88
3' ss Seq
CTTTTGGTCTGTCTTCAAAGGCT
3' ss Score
7.46
Exon sequences
Seq C1 exon
CATTCTGCAGGCTCAGGAGTTTGAATGGGAAAGCCAGCTGCGCTTCTACTGGGACCGAGAGCCAGATGAGCTGAACGTGCGGCAGTGTACAGGCACATTTTCATATGGTTATGAGTACATGGGTTTGAATGGACGTCTTGTGATCACCCCGCTTACAGACCGTATTTATCTCACATTAACACAG
Seq A exon
GTATATATATTAAAGGAGCTCTTTTTAACTAACGTGCACTTTTAAAATATGCTTCCATGCAATCACATAGTTGGCAACTAGGACATAAAGTAGGAAAAAAAATACAACAATGTGAACAGAAACATGTAATAAGTAGGTTGCAATAGTCTTCTAAACTAATTGCTTCAAAGATAACATAGAATGCATGTACAAAGAAGATTTAAGGCTTGTTGTACCCATGGATTTGTTTGTGAATTTGCTACCAGCTTAATACGAATCCTTTGTGTAGTGGAAATGCTAAGTCACGGATTGAACCAGTGATTGATCACCTGGTAGGAAATCAGGGCCAGGCCAGGGGAGCTCAGGTGCAGACCTCATTTCTGGGGGTGGCTTACCTTCTGAGACCTTCAGAAGGTAAGCAGCTTCTTTCCTTTATTTCTGTGCCCACAGCTGTTGTATTTGTGCAAATCTTCACTTGTTGTAGCCTAGGTTCTTGCTGCTCTGCTGTTATTGCTCTGCTTTTCATCGCATTACACTTTGCCTTTTGGTCTGTCTTCAAAG
Seq C2 exon
GCTTTATCAATGTTTTTGGGAGGAGCACCAGCAGGGCCAGCAGGTACAGGGAAAACAGAAACAACCAAGGATCTGGCCAAAGCACTGGGCTTGCTGTGTGTGGTGACAAACTGTGGAGAAGGCATGGATTTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.089
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(11.3=41.9)
A:
NA
C2:
PF127742=AAA_6=FE(19.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCTGCAGGCTCAGGAGTT
R:
TTGAAATCCATGCCTTCTCCACA
Band lengths:
318-858
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]