MmuINT1008717 @ mm10
Intron Retention
Gene
ENSMUSG00000038011 | Dnah10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:124775345-124777293:+
Coord C1 exon
chr5:124775345-124775528
Coord A exon
chr5:124775529-124777158
Coord C2 exon
chr5:124777159-124777293
Length
1630 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACA
5' ss Score
5.49
3' ss Seq
TTACATGTGGCTGCTCACAGGCG
3' ss Score
6.81
Exon sequences
Seq C1 exon
CATCCTTGAGGCCCGGGAGTTTGAGTGGGAGAGCCAGCTCCGCTTCTACTGGGACCGCGAGCCAGATGAGCTCAACATCCGCCAGTGCACTGGGACCTTCAGCTACGGCTATGAGTACATGGGCCTCAACGGGAGGCTGGTCATCACGCCCCTTACAGACCGCATCTACCTGACGCTCACACAG
Seq A exon
GTGACATATTTGCCCCTGGACATAGCCTGTTGGTTGTTCTAGACATGGGTCTTAGCTTTGAGTTTGGGAAATAGCTTGCACTTGGAGTCTGACTTGTCACTATTGGAACTGAAACCCCCGAGGACATCTTCCCTGGGACACTGGTCCCTATGCAGTAGTGATGGAGTCAGAGGGTAATAGAAAAATCACAGAAATGTGTAAGATGCATAATATTAAAGTGTATTGGACCATGAGAAGGCCAGTGGAGGAGACCATGTCTCCTCTTAGGGTGGCGCCAGTCCATCGTAAGGCAGATTCTTTTGTTTGTGGTACTGTGGCTAGAACCGAGGGCCTTGAACATGCTAAGCAAGAGCTTACCCACGGAGCTGTACCAGAGCCTGCATCACAGTGCCTGTGTGTGATGGGTCCCTTAGCGCACAGCTGAGCTTCAATCCCACACTGTGTACAGCACACTCCTGTGCTTGTCTCTGCACTACCTCGCTGTACCTGGGGGTAAGTGGGTGAACGGACGGATGAAGCCCGTGACAACTGTGAGCCCTTTGTCTTTCTAAAAAAAAGTGTGAACTTCAGCCAAGCGTGATGGTCATGTTTGCTGAGGTGGAGGAAGAAGGATCAGGAGTTCAAGGTCACCCCGAGCTATATAGCTGGTTGTTGTTTTTTTTTTTTAACCTTTTCCTCTTTATTTTTCTTTTTAAAAAATATTTATTTATTTCATGTATGTGGGTATACTATCGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACAGCTGAGCCATCTCTCCAGCCCCACCTTTTTTTTTTTTTTTAAAGATTTATTTATTATGTATACAGTGTTCTACCTGCATGTGTGCCTGCATGCCAGAAGAGGGCACCAGATCTCATTATAGACGATGCCATAGCAAGTTTTCGGCCAACCTGGGCTACATGAAACCCCGTTTCAAAAGCAAAATGTTTAAGCCTTTCTGTGAGTTAGGGGGCTAAAGAGACAGGATCAATGGGAGACCACAAGCATAAGCACTTTATGACAGAGAGGTTGGAGGCATGTTAGTATCCTAGCCTGCCGTTGGCCAGCTGGACAGTCAGGACCGAAGGCCAGAGGGAGCCACTTACATTTGGGTCTGAAGCCCTGAGTAATGTCAGAGTACAAGGCCACTAGCCCAGCCAAAGTGGAAAAAGCCTCTCTTTTTCCTTTGGTTCCACCCAGTTCTCGAGTGGTGGGGTGGTGGTTGTGGTGATGATGGTGGTGACGGTGACGGTGGTGATGGTGGTGGTGATGATGGTGGTAACAGTGACGGTGGTGATGGTGGTGGTGGTGTAGCTGATATTGTCCACCCTGACATCTAACTAACTTGGCTCACCATAAAGTGTCAGTCTCTGAGATACTCTCACAGACACACCCAGGAATAACCCAGGACAGCTCCCTGGACAATCGAGCTGACACCCGGAGTTGACAGTGTTCATAGTGTCTACCCATGTGTCCCAGAGATGTGTCCAGGAGTGGCACTCTTTCAGAACACATGTGTTTTACATGTGGCTGCTCACAG
Seq C2 exon
GCGCTGTCCATGTATCTGGGAGGTGCCCCTGCTGGTCCAGCAGGAACCGGCAAGACAGAGACCACCAAGGACCTCGCCAAAGCCCTGGGCCTCCTGTGTGTTGTCACAAACTGTGGTGAAGGCATGGATTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011:ENSMUST00000141137:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.111
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(11.3=41.9)
A:
NA
C2:
PF127742=AAA_6=FE(19.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCTTGAGGCCCGGGA
R:
TTGTAATCCATGCCTTCACCACA
Band lengths:
318-1948
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types