DreINT0009113 @ danRer10
Intron Retention
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27735130-27735538:+
Coord C1 exon
chr5:27735130-27735313
Coord A exon
chr5:27735314-27735403
Coord C2 exon
chr5:27735404-27735538
Length
90 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
ACATTGTATGATAATCTCAGGCC
3' ss Score
3.1
Exon sequences
Seq C1 exon
CATCACAGATGCTCGTGAGTTTGAATGGGAGAGTCAGTTGAGATTCTACTGGGTGAAAGAGCCTGATGAGCTGTTTGTGCGGCAGTGCAGTGCTCAGTTCTGCTACGGCTATGAGTACATGGGACTGAACGGCCGACTGGTCATTACTCCCCTGACTGACCGCATCTATCTCACACTTACTCAG
Seq A exon
GTACCCAGTCTATGCAGTTATCCCACCCTAAATGGCCTATTTGGTGTGTGTTTTATGCTATTAATACTGTACATTGTATGATAATCTCAG
Seq C2 exon
GCCTTGTCTATGTTCCTGGGTGGAGCACCTGCCGGACCTGCGGGTACAGGCAAAACTGAATCCACTAAAGATCTGGCTAAAGCTTTGGGACTTTTGTGTGTGGTCACCAACTGCGGCGAGGGCATGGACTACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486:ENSDART00000135878:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.044
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(11.3=41.9)
A:
NA
C2:
PF127742=AAA_6=FE(19.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTACATGGGACTGAACGGC
R:
TGACCACACACAAAAGTCCCA
Band lengths:
178-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]