MmuINT0050594 @ mm9
Intron Retention
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125255715-125257663:+
Coord C1 exon
chr5:125255715-125255898
Coord A exon
chr5:125255899-125257528
Coord C2 exon
chr5:125257529-125257663
Length
1630 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACA
5' ss Score
5.49
3' ss Seq
TTACATGTGGCTGCTCACAGGCG
3' ss Score
6.81
Exon sequences
Seq C1 exon
CATCCTTGAGGCCCGGGAGTTTGAGTGGGAGAGCCAGCTCCGCTTCTACTGGGACCGCGAGCCAGATGAGCTCAACATCCGCCAGTGCACTGGGACCTTCAGCTACGGCTATGAGTACATGGGCCTCAACGGGAGGCTGGTCATCACGCCCCTTACAGACCGCATCTACCTGACGCTCACACAG
Seq A exon
GTGACATATTTGCCCCTGGACATAGCCTGTTGGTTGTTCTAGACATGGGTCTTAGCTTTGAGTTTGGGAAATAGCTTGCACTTGGAGTCTGACTTGTCACTATTGGAACTGAAACCCCCGAGGACATCTTCCCTGGGACACTGGTCCCTATGCAGTAGTGATGGAGTCAGAGGGTAATAGAAAAATCACAGAAATGTGTAAGATGCATAATATTAAAGTGTATTGGACCATGAGAAGGCCAGTGGAGGAGACCATGTCTCCTCTTAGGGTGGCGCCAGTCCATCGTAAGGCAGATTCTTTTGTTTGTGGTACTGTGGCTAGAACCGAGGGCCTTGAACATGCTAAGCAAGAGCTTACCCACGGAGCTGTACCAGAGCCTGCATCACAGTGCCTGTGTGTGATGGGTCCCTTAGCGCACAGCTGAGCTTCAATCCCACACTGTGTACAGCACACTCCTGTGCTTGTCTCTGCACTACCTCGCTGTACCTGGGGGTAAGTGGGTGAACGGACGGATGAAGCCCGTGACAACTGTGAGCCCTTTGTCTTTCTAAAAAAAAGTGTGAACTTCAGCCAAGCGTGATGGTCATGTTTGCTGAGGTGGAGGAAGAAGGATCAGGAGTTCAAGGTCACCCCGAGCTATATAGCTGGTTGTTGTTTTTTTTTTTTAACCTTTTCCTCTTTATTTTTCTTTTTAAAAAATATTTATTTATTTCATGTATGTGGGTATACTATCGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACAGCTGAGCCATCTCTCCAGCCCCACCTTTTTTTTTTTTTTTAAAGATTTATTTATTATGTATACAGTGTTCTACCTGCATGTGTGCCTGCATGCCAGAAGAGGGCACCAGATCTCATTATAGACGATGCCATAGCAAGTTTTCGGCCAACCTGGGCTACATGAAACCCCGTTTCAAAAGCAAAATGTTTAAGCCTTTCTGTGAGTTAGGGGGCTAAAGAGACAGGATCAATGGGAGACCACAAGCATAAGCACTTTATGACAGAGAGGTTGGAGGCATGTTAGTATCCTAGCCTGCCGTTGGCCAGCTGGACAGTCAGGACCGAAGGCCAGAGGGAGCCACTTACATTTGGGTCTGAAGCCCTGAGTAATGTCAGAGTACAAGGCCACTAGCCCAGCCAAAGTGGAAAAAGCCTCTCTTTTTCCTTTGGTTCCACCCAGTTCTCGAGTGGTGGGGTGGTGGTTGTGGTGATGATGGTGGTGACGGTGACGGTGGTGATGGTGGTGGTGATGATGGTGGTAACAGTGACGGTGGTGATGGTGGTGGTGGTGTAGCTGATATTGTCCACCCTGACATCTAACTAACTTGGCTCACCATAAAGTGTCAGTCTCTGAGATACTCTCACAGACACACCCAGGAATAACCCAGGACAGCTCCCTGGACAATCGAGCTGACACCCGGAGTTGACAGTGTTCATAGTGTCTACCCATGTGTCCCAGAGATGTGTCCAGGAGTGGCACTCTTTCAGAACACATGTGTTTTACATGTGGCTGCTCACAG
Seq C2 exon
GCGCTGTCCATGTATCTGGGAGGTGCCCCTGCTGGTCCAGCAGGAACCGGCAAGACAGAGACCACCAAGGACCTCGCCAAAGCCCTGGGCCTCCTGTGTGTTGTCACAAACTGTGGTGAAGGCATGGATTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-Dnahc10:NM_019536:32
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.110
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(11.3=41.9)
A:
NA
C2:
PF127742=AAA_6=FE(19.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCTTGAGGCCCGGGA
R:
TTGTAATCCATGCCTTCACCACA
Band lengths:
318-1948
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: