BtaINT0050181 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54131063-54133258:-
Coord C1 exon
chr17:54133075-54133258
Coord A exon
chr17:54131198-54133074
Coord C2 exon
chr17:54131063-54131197
Length
1877 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACT
5' ss Score
6.6
3' ss Seq
TTGCATTTGACTTCTGACAGGCA
3' ss Score
6.46
Exon sequences
Seq C1 exon
CATTCTCGAGGCCCGGGAGTTTGAATGGGAAAGTCAGCTGCGTTTTTACTGGGACCGGGAACCAGATGAGCTGAACATCCGCCAGTGCACGGGCACCTTCGGATACGGCTACGAGTACATGGGTTTGAACGGGCGGCTGGTTATCACGCCCCTGACGGACCGGATCTACCTGACGCTCACCCAG
Seq A exon
GTGACTGGCGGCCTGGCTCTGGTCGGGATCATTCACCTGGGGTTATGTGTTTTTTCTCTAGGTGTGATAGTAATTGTGATGGTGTACTGGGTTGAACAGGCTTCCCAAGTGGCTCAGTGGTAAAGAACCTGCTTGCCAGGGTAGAAGAGGTGGGCTCGATCTCTTGGTTAGGAAGATCCTCTGGAGGGGGAAATGGCAACCCGCTCCAGTATTCTTGCCTGGGAAATCCCATGGACAGAGGAGCCTGGTGGGCTACAGTCCGTGGGGGGTCGCAAAGAGTCAGTCATGATTGAGCACGCATGCACTGGGTTGAACATTGTCCTCCCCACCCCAAATTCATGTCCACTCAGAACCTCAGCTATGACCCTGTTTAGAAATAGGGTCTTGGCAGATTGAATTAGTTAAGGATTGGGGTGAGAACATCCTGGATTAGAGCCCTAGTACCAATGCCTGGTGTCTGTGTACGAAGAGGAGAGAACACAGAGGCACGGAAGAGATGTGAAGACAGAGAAAGAGACTGGAGAGAGGCAGCCACACGCCAGGGAATGCCTGGAGCCACCAGAAGCTGGAAGAAGCCAGGAATGAGCCTCCCTTAAAGTCTTTGGGGGCAGTGTGGCCCCGCTCACACCTTAATTTCACTTTTAGCCTCCAGAACTGTAAGAGAACACATTTCTGTTGTTTTAAGCCAGACAATTTGGGGTGCTTTGCTCTGGCAGCCCCAGGAAACGAATGTTGATAGTAAAGGGTTCGATAGTAAAGGTCGTTCTTTAAAAATCTGTAAAAGAAGTTCCATTTGAAATATGACATACTTGCTACCTTTTGGGATCGGGGTGTTTCAAGTTCTGGTGGCCCCCCAAACCACCCTCAGTTTCAATAGTTTGCTAAGAGGAATTACAGAATTCAGTAAAGCCTTTGTGGTCATGGTTATGGTTTTTATAGGGCTTCCCAGGTGGCTCAGTGGTAAAAAAAAAAAAAGTCTGCCTGTGATGTGGGTTCAACCCCTGGGTCAAGAAGATCTCCTGGAGAAGGAAATGGCAACCCCCTGCAGTATTCTTGCCTGGAAAATCCCATGGATAGAGGAGCCTGGTGGGCTATGGGGGTGGCAAATAGTTGGACAGGACTTGACTGAACAGCAGCAACAACAGCAACAACATGGTTTTTATAGCAAATGGTTACAGATAAAAATCAGCAATGGGAGAAGGGAGACCTAGCTCCAGCAATGGGACAGGGTCTAGGAGAGACCAGGTCTAAGCTTCAGTTTCCTGTTCAACGCAACGGTCCAGACAGCATCATTTTCTCCAGCAACTATGTGTGAAGTTCTGCTGCCCAGGGAAGCCCACCGAGCCTTGGGTTTTAACTAGGGGCTTGTCATGCATACAAGACTGACCCCTCTAAATGACTGACCTTAGTCTCCAGACCCTCTCGAAGTTGATCTAGGGCTTCCACCATAAATCGCATTGTTAGACTGTCCGGCGTGGCCCAAGGTCCCCAGATAAACGAGGACTCTCTTCTGAGGCAGAACATTCCGGGGCCTTAGAGGTCAGCTCCTAGGATCTAAAGACAAAGGGCCAAACCTTTCTTTGGGCAAAATAAATCCTTCCCTGCACATATGTCCATGTTCCCATGAGCCTCAGCTCTGGGAACTGCTCGGCCTTGTCCTCAGGGCGGGTACAGAGTCCAGCATGTTGTGGAGTTGTTGGTTTACTGGTCCCTGTGTAACAGGGGGTGGGGATGGAGTGGTCAGTGGAGGTCAGTGGTCACTGTCAGAAAAGGTGCATTACCATTTATATATTCCACATAGATTGTCATGAACTGGTCATTGACACCTCCTTCCTTCCATGGCAGACAACACGTGTTTTGCATTTGACTTCTGACAG
Seq C2 exon
GCACTGTCCATGTATCTGGGTGGGGCTCCTGCTGGTCCAGCAGGTACCGGCAAAACCGAGACCACCAAGGACCTGGCCAAAGCCTTGGGCTTGCTCTGTGTCGTAACCAACTGCGGCGAAGGCATGGATTACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523:ENSBTAT00000029664:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.111
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(11.2=41.9)
A:
NA
C2:
PF127742=AAA_6=FE(19.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCCCGGGAGTTTGAATG
R:
TTGTAATCCATGCCTTCGCCG
Band lengths:
311-2188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development