MmuINT0050989 @ mm9
Intron Retention
Gene
ENSMUSG00000052861 | Dnahc6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:73094004-73094809:-
Coord C1 exon
chr6:73094654-73094809
Coord A exon
chr6:73094166-73094653
Coord C2 exon
chr6:73094004-73094165
Length
488 bp
Sequences
Splice sites
5' ss Seq
ACAGTACGT
5' ss Score
7.54
3' ss Seq
CAATTGACTGTTTTCTTCAGGAT
3' ss Score
7.93
Exon sequences
Seq C1 exon
GTCGACTCAGCCGACTCCTTCGACTGGCAGCGGCAACTGCGCTATTACTGGGACATGGACCTGGATAACTGCGTGGCTAGAATGGCGTTGTCCCAGTACACCTATGCCTATGAGTACTTGGGAGCGTGCCCGAGGCTGGTCATCACTCCTCTCACA
Seq A exon
GTACGTTACTGAGCACTGAGGTTTACTCACACTGGCCCAGGGCCATCATGAAAGTCTTCTCCGCCACCACATCTTTACATAGCAAAGACTTTCGTTGTTTGATTTGTGCGCCTGAGTCTGCGAGTATATTTCCACTAGAAATTTTCATGGCCAGGGAGATGTGTGGAAAGTGCTTGCCATGCAGGCATGAAGAGTTGGCTTCAGATCCGCAGAACCCATATAAGAAGCTGGGCCTGGAGGCCTGGGCTGCAATCACAATGATAAGGAAGCAGAAACAGGAAGATCCCTGTAGATCACAGGCCAGCCACTCTAACAAATCAATGAGAGACCCTGGCTTAAAAAGTAAGAGAAAGTGATTGAGAAAGGCACCTAATGTTGACCACTGACACACGCACACATACACTTCTAGCCAATAAATGAACCAGGCCTATGAACTTGTATTTAAAGCCAATTCTCTTCGATAAAAACCAATTGACTGTTTTCTTCAG
Seq C2 exon
GATCGCTGCTACCTTTGCCTCATGGGGGCTTTGCAGCTTGACCTCGGAGGCGCACCAGCTGGCCCGGCTGGCACAGGGAAAACAGAGACCACCAAAGACCTAGCAAAAGCCCTCGCCATCCAGTGTGTGGTCTTCAACTGCTCTGACGGTTTGGACTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861-Dnahc6:NM_001164669:28
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.056
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(7.4=32.7)
A:
NA
C2:
PF127742=AAA_6=FE(22.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGACTCAGCCGACTCCTTC
R:
GTCCAAACCGTCAGAGCAGTT
Band lengths:
311-799
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: