RnoINT0049023 @ rn6
Intron Retention
Gene
ENSRNOG00000015581 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:101080437-101081288:-
Coord C1 exon
chr4:101081133-101081288
Coord A exon
chr4:101080599-101081132
Coord C2 exon
chr4:101080437-101080598
Length
534 bp
Sequences
Splice sites
5' ss Seq
ACAGTACGT
5' ss Score
7.54
3' ss Seq
CAATTGATTGGTTTCTTTAGGAT
3' ss Score
7.3
Exon sequences
Seq C1 exon
GTAGACTCAGCGGAGTCCTTTGACTGGCAGCGGCAGCTGCGCTACTACTGGGACGTAGACCTGGATAACTGTGTGGCTAGAATGGCGCTATCTCAGTACACCTATGCCTACGAGTACTTGGGAGCATGCCCGAGACTGGTCATCACTCCGCTCACA
Seq A exon
GTACGTAATTGAGCACTGAGGTTCACGCTGGCCCAGAGCAACCATGAAAGTCTTCACCATCACCACACCTTTACAAAGCAAAGATTTGCATTGTTTGATTTGTGCACCTGGGTCTGCGAGTTCATTTCAGCTAGAATTTTTCAGGGCCAGGGAGATGTCTCGTTCTGAAAAGCGCTTGCCGCGCAGGCATGACAAGTTGAGTTCAGATCCCTAGCACCCAATATAAGAAGATAGGCAACCAGGCCCGGGCGGCAATCACAGTGTTAGGGAAGGAGAAACAGGAAGAACCGGCCAGTCAGTCTAACAAATCAGTGAGAGACCCTGGCTTAAAAAAGAAAAGGGAAAGTGATTGAGGAAGGCACCTAGTGTTGACCACTGACACACATGCACGCGCGCGCGCACACACACACACATACACACACACACACACACACACACACACACACACACACACTTCTATCAAATGAATTAGACCTATGAATTTGTATTTAAAGCCAGTTCTCTTTGATAATGACAATTGATTGGTTTCTTTAG
Seq C2 exon
GATCGCTGCTATCTTTGCCTCATGGGGGCTTTGCAGCTTGACCTCGGAGGCGCACCAGCTGGCCCTGCTGGCACTGGGAAAACAGAGACTACTAAAGACCTAGCAAAAGCGCTTGCCATCCAGTGTGTGGTCTTCAACTGCTCTGACGGTTTGGACTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581:ENSRNOT00000020894:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(7.4=32.7)
A:
NA
C2:
PF127742=AAA_6=FE(22.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGCGGAGTCCTTTGAC
R:
GTAGTCCAAACCGTCAGAGCA
Band lengths:
310-844
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]