HsaINT0049859 @ hg19
Intron Retention
Gene
ENSG00000115423 | DNAH6
Description
dynein, axonemal, heavy chain 6 [Source:HGNC Symbol;Acc:2951]
Coordinates
chr2:84931191-84932871:+
Coord C1 exon
chr2:84931191-84931426
Coord A exon
chr2:84931427-84932609
Coord C2 exon
chr2:84932610-84932871
Length
1183 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
ATATCATGTCTGTCTTTCAGGCC
3' ss Score
11.01
Exon sequences
Seq C1 exon
GTCCGTAACACTGTGCAGGAGGATGAAGCAACAGCAAAAGTCAAAGCTGAAGAAACCCAAGCAATAGCTGATGATGCTCAAAGAGATCTTGACGAGGCACTACCTGCACTAGATGCTGCCAATAAAGCACTGGATTCCTTAGATAAGGCAGATATATCTGAAATCAGAGTTTTTACAAAGCCCCCAGATTTGGTCATGACAGTAATGGAAGCAATCTCCATTCTTTTGAATGCCAA
Seq A exon
GTGAGTAATTCAGAGTCATGTATTGCCATGATACCTGGTAAGAGTTCTTTACTGTTTTCCTCCATGGTAATGTATATATTCATTCCCTTCTCCACCTTCTCATTGCTTCAGTTGGTCATTCAACAAATTGATTCAAGGAGCATTTTCTTCCCCAACATCTATTTTGTACTAGATGGTGGAAGATATGTTTTTCTCTGCAAGATATACACAGGCTAGTGGGAAGACAGACATGAAAACTAATAATTTCATTGCAATGTGAGAGTTGTGTAGTATTGGGAGTGCTGAGAAAACAGTGCCTAAGCCCAGCTGGGATGTGCAAGTAGGTTTTTTGGAAAACACTGCTCAGTTGGATAGTGGGACCATAGGCGAGCTCAGGAATGAGCTTTAATGTTCTTGGAGTGGGATGGGGCTGGGCAGGAGGCCAGTGATTGCATCACGAAAGGTCTTAAAAGCTGCACTAAACACTTCAGATTTCATCTTGGAGATATGTAGTTTTCAAACTTTCTTTAGTGATACAAACTTTTTTTCAATAAAATTATGTTGTAATGAACCTTTCTGTGTAAAACTAGGCAAAGGGCTCAGAGCACCACATCACCACCAGGCTTCCAGGAGACAGGGTGGAGAGGTTCCCACTGACCCTTAAACTGGTACCTCGGTAGGACCCAGAGAGCTCTGCAGAGCACAGATAGAGAGCTGTGGGCAGAAGGGACTGAGAATCGTTGAACATTTTTTATCTAATCAGATTTTCATGGTAGGAAGATCAATCTGGCAAAAGTTCAGAAGAACAAAGTTCAAAGAGACATAAAGCCCAGTTAGAAAGCAATTGTAGTGTCCTGGCAGGTGATTTTAAGGGTGGGAACTATGATAAAGGAGGTAAAATGTGAGTGCCTGCGGCGTTTTAAAAATAAAACTATTGTTTCTATAATGCCTTACATTTCTAAAACTGTGATTTTGTAATTCTTTCTCTACCAAAGCTGGGTCGCATGGAAACTTAGTCACCCATTTTCTTTTCGCCCCCTGAATTAATTGTGGTGCACCTAACTACCAATTACTAAAATTATAGTACCAAGATTAAAATTATCCACTTATTGGGATAATATCATAATGTTCTCAAAGAAATACATTCTTTTGTTCTTATATTACTTCATTTCAGTGCCATTAATATATCATGTCTGTCTTTCAG
Seq C2 exon
GCCTGATTGGCCATCAGCAAAGCAACTTCTTGGTGACTCTAACTTTCTAAAAAGGCTTTTAGAATATGATAAGGAGAACATAAAGCCTCAGATATTGGCAAAGCTTCAAAAGTATATTAATAATCCTGATTTTGTGCCTGAAAAAGTGGAGAAAGTGTCCAAAGCATGTAAATCTATGTGCATGTGGGTAAGAGCTATGGATTTGTACTCTCGAGTGGTCAAGGTCGTCGAACCAAAAAGACAAAAGCTCCGCGCCGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115423-DNAH6:NM_001370:51
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.278 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(23.3=100)
A:
NA
C2:
PF127772=MT=FE(26.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCCAATAAAGCACTGGA
R:
GTTCGACGACCTTGACCACTC
Band lengths:
356-1539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)