HsaINT0050098 @ hg19
Intron Retention
Gene
ENSG00000007174 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:2953]
Coordinates
chr17:11522865-11532901:+
Coord C1 exon
chr17:11522865-11523098
Coord A exon
chr17:11523099-11532733
Coord C2 exon
chr17:11532734-11532901
Length
9635 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TTTGTGAATTGTCCCCATAGGGT
3' ss Score
10.35
Exon sequences
Seq C1 exon
GCCTCTAATTATCTCAGCCCAGAAGACCTGCTGAGAAGTGAGGTAGAAGAAAGTCAGAGAAAACTGCAAGTGGTCTCAGACACTTTGAGCTTCTTCAAGCAAGAGTTTCAGGACAGAAGGGAGAATCTCCACACTTACTTCAAAGAGAACCAGGAAGTCAAGGAATGGGATTTCCAGTCTTCTTTGGTCTTTGTGCGATTGGATGGCTTCCTGGGACAACTGCACGTGGTGGAG
Seq A exon
GTGAGTGCGCACCTCACCTCAGGCTGCCAGCCCCAGACAGAAAGAAGCAGTCCAGGGGTCCAAAAAGTGGAATAGGAAAATGCACAACACAACCTCATAGCCAACCCTCCATCAGCTGGAATAATCCATAATAAAGGTTCAATTGGCCAGTCACAGTGGCTCATGCCTGTAATCCCACTAGCACTTTGGGAGGCAAAGGTGGGTGGATTGCTTGAGCCCAGGAGTTTAAAACCAGCCGGGCCAACATGGCAAAACGCCTTCTCTACAAAAAATACAACAACAACAAAATAGCCAGGTGTGGTGTGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATGGCTTGAGCATAGGAGGCAGAGGTTGCAGTGAGTCGAAATTGTGCCACTGCACTCTAGCCTAGGCAACAGGAGCCAGACCTTGTCTCAAAAAAACAAACAAGGGCCAGGCATGCGGTGGCTCATGCCTGTAATCCCAGCATTTGGGGAGGCCAAGGCAGGTGGATCATGAGGTCAGGAGTTCGAGACCAGTCTGGTCAACATGGCGAAATCCTGTCTCTACTAAAAATACAAAAATTAGCCAGGTGTGGTGGCACACGCCTGTAATCCCAGCTACTCGGGAGGCCGAGGCAGAGAATTTCTTGAACTCGGAAGGCAGAGGTTTCAGTGAGCCACGATCACACCATTGCACTCCAGCATGGGTGACAGAACGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAGAAGTTTTAATAAATAGTTGTCATTTGGATTGACCATCACATCACATAATAGTGGTTATAGTAGAAGTTTAGGAAATCCTGATCATAGACCCATTTAGGAAGAAGGCCCAAGGAATCAATGAACTAGTTCAATTGGTTTGCAGATTGCCCATAGCCTTTGAACTGGGTTTCAAATAAACTCTGCCTAGAAAGACTGACACTGAGCAAACCTTGGCTGGGCTATAACCATTCCCGCAAAGCTGGCTGCTTTGAACTTCTCCTCCTCCACTCCCCAATCTCCAAGGCAGCTCCCCAAAGTCCAAAACGAATGAGTCCCTGTGCAAAAGAAACATGACTTTTGCTCAAAGTTATGTCTTTCCCTCAATTATTTAAAAATAAATATGGATTTTAGGTGAAGTACTACGGTGAGAAGACATGATACTATTTCTTTGGATTGTTTCAATTCTCAAAACTTAATATGTTTAACAGGTCTCTCAACATTTTACAGCTATGTGTTTGCTGATTGGACTTGGAAGGGAGGGTAATGGGCCTAATAAAATGAAATACAGACTTAAACGGATTTGAGAAATTCAGGGTTGAGTTTAAGATTAAGACAAGAGGCCGGGCACGGTGGCTCTCCCCTGTAATCCCAGCCCTTTGGGAGGCTGAGGCAGGCGAATCACAAGTTCAGGAGTTCATGATCAGCCTGGCCAACATGGTGAAATCCCGCCTCTACTAAAAAGACAAAAATTAGCCGGGTGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGTTTGAACTCGGGAGGTAGAGGTTGCAGTGAGCCAAGATCGCGCCATTGCACTCCAGCCTGGGAGACAGGGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGACAAGAGCCAGAGGGACAGGGAAGGAACAAGAATCATATTCCCAGCTGTCATGAGCAGGTTTGGAGGAAAGAGAGCTATGCTGGGAGGAAGCCATGATGAACAGAGCAAACCATGGGAGGACAAGGACAGGAGAACGTAAGATTGGATCTGTTATCAGTTCAGAAAGTATTGGTTCAGCATCACCATGTGCCAGGCACGGAGCTAGGAACTGAGATACAAAGACGACTGAAATGCGATTTCCCTGTAAGAGGCTGGTGGACCTGCAGCCACTGCAGGAGAAGGAAGACAGACTAAAGGACGAGATCCGGGAGGAAAGACACAGAATCAGGAAAGTGGGATATACTGACTGCTATCAGAAAAGTGAGATTGGGCTGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTAGGAGGCCGAGGCAGGTGGATCACAAGGTCAGGAGTTTGAGACGAACCTGACCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAATTAGCCTGGTGTGGTGACGTGCACCTGTAGTCTCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACCCGGGAGGCAGAGCTTGCAGTGAGCTGAGATCGCGCCACTGCACTCCAGCCTGGGGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGTGAGATTGATGTGTTACTGGGAGCAAGAAAGAGGGGTCTCTAGCCCAGTAGGACTTTGACAAAAAGTGGGAACACAAGAGAAAATCAGTTGTGAAACTGGAGTGGGAATTTGCCAGGGAAGACAAAGATGGGAAGGGCATAAAGAGAGAAAATGCGTGAGAGAGAAAGCCAGAAGCTAGATCTTATGAAAGGCGCACCTTAAACCCTTCATCAGGATCACAGAGACTATAAATAATTGATTATCTAGCTTTATCCTAAATGCCTCTTTTTCCCTCAGCCGTTTCCATCATGGTTGATGTACAGCCCTTCACTCCTCCTGCACTCTGTATTCCTCTCATATCCACCACCAATTCCTTTGCTGCTGTTTAGTGAGAGGTGAGGGACACTCCAGCCCCAGCCCATGCCTGGCCTGGGCTGACCACGAAGAACGAATTTCCATCACTGCCTGGCAGCGGCCATGTTTGCAGATGCTCCAGCCCTGCAGATGGCCCTGGGAATGGTAGCAGAGCATGACCCCAGGCCCTGTGCACACATGCTAATGATTTGACTTTGCATATAGACAGCTATTCTAACATCAGGGCGCCTAATCTGCAGGATATGTTCAGTAAATATAAGCAGTGATGGCCACCAGCCTCCCTAGCGTCATTACTCTCACAATAAGTCCTTTCTCAGGCTGCTGCTGCTTTCTGAATCAAGGGCACAGGTGCATAAAAAGCAGTTGCCCCCATTTAATTAGAGGATGACATGAGTGTCACCAAGCTCCCTGCCTTGCTGCCTCTCATTCTCTTACGTGTCGTTCTGTCCTTGGCTCTGGTTAGCTGCTTTGCTCCTGTGCCCAGCTGCTCCTTTTCTTTTCTTTTCTTTTTCTTTTTTTTTTTTTTTTTTTCTCGAGATGGAGTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACGACAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGTGCCACCATGCCTGGTTAATTTTTGTATTTTTAGTAGAGACAGGGTCTTTCTGTGTTGGTCAGGCTGGTCTTGAACTCCCAACCTCAGGAGATCCACCCAGCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGTGCCCGGCCAGCATTTCTTTTCTTGACTGTGTTTCCCTCTCTTTCCCTTTGTCTAATTCTTCCTCCCTTTTCACTTGGTCCCCCTTTCACTTTGTTCTCCTTCTCTATTTTCTAACTTCCCTGACCTCTTTGTTTGCCCTGAATTTCCATGTGTTTTCATCTTCCCACGGCTACTCCTTGCCCCTTTTCCTCATATTTCCTCCCCTCTTTTATTTTTAATCTCCCAAATGTCTGCTTAGATGCATCGCCCTTGCCCTTTGCCATCTTCCTCCTCCCCCAGCTCTTGCCTCCTGAGTCTGTGCAGTGGAACACAGGACTATCAGCTGTCCTCTGGCATATTTCATGTAGGCCTTTAGTTAATATTCTGTGTATCTCTGTGATCGATGCCTGATTGAAATGGGATTAATCTGCTCCTCTCCAGTAAGAATTATCATGAACTTAGCCTTATTCATCTTCTATTCTAATACAATCTATGGCCACTGAGATGATGGTAGCTGCAATTAATAAATACATGAAACACCAATGTGTTTATCTCTCTGCATGCTCTCGTCACGGGTTAGAGTGTGAAGGGCTGGTTTTTAATCCCCACAATTCTCCCAGATTTCATTTCTCTGATGTGAGTTGCTTTTTTATTCTTTCACTCTTTTTGCACAAGAGAATTTTGTTGTGCACATCCACTCTTCCTCTCTGGGTGCCTGCTAAATGCCAGAGGTGGGGCTGGCTTGGAAGAAGGGGTATACATTGCCCAGTATTTTTCGGTGTCTGCAGTAAGTGGAGTAATTGCATTTTCAGGATACCACCATTCTCCTCTGCCTTCTTATCATAACCATGATACAGGTAATCTCTTAGAGATTTAACCCTTGTGGAGGGAAGAACAAGGAATAGAAAACTAAAAAATTAACATGTTTCAAGAACCTATCCCATGCCAGAGCCTGTATCCTTGCAATCATCTTAAGAACTGGGGCCGGGTGCAGTGGCTTACGCCTGTAATCCCAACACTTTGGGAGGCCGAGGTGGTGGGATCACCTGAGGTCAGGAGTTTGAGACAAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGCGGCATACCCGTGTAATCCCAGCCACCCAGGAGGCTGAGGCAGGAGAATCGCTGGAACCTGGGAGGCAGAGGATGTAGTGAGCCGAGATCGTGCCACAGCACTCCAGCGTGGGTGACAGAGCAAGACTCCATCTCAAAAAAAAAAGAAAAGAAAAGAACTGGGTATCAGTATCTTTTCTTTAACAAATGAGCATAACTAAATCTGATACATAAATGAGCTCACCCATAGTTACACAGGTTGGAGAGGTGTAGCTGAGATTTGTACCCAGGGGGACAGCTGGTTCCAAGTACTGTCTTTGCACCAAACTTTGATATCCTATAGGGAGTTGTGAAGGTCTGTTTCCCTCCTTCCGTCCTTTTCTCCCTTCCTTCCTTCTTTCTTTCCTCCCACTTTCCTGGTTTGAGGATCCCAAACTGGTTTTGTGGTTTTATTCTGCCCTTATACACTCTGTTCTACTTTTGTACACTCAATTTTTGCCATACAATTTCTAGGTCTTTATATCAAAGTAAGTTACTCAGGTACAATTATAATTCCCATTTCATGAAAGGATCTTATTTGACTTTATGACTTACTAAGAAAATCCCAGAAGTATATAAAATCTTTGCAATTTGAATGAGCCATCAAAGTTCAAAGAGAAAAAGAGTTGTTGGGTTGCCTCTTGATTCCTTCTTTCATCCTGCCTTCCTGCTTGATGCATCAGTGCACACACACACACACACACACCGAGTTCATTTTTGCGTCATAGAGTTGTAGATTCTGCAGATCCCCTGTTTGAGTTTCTGCCTGCAGCCTCTTCCCTCCAAACAATGCAGTAAGCACCTTGGCGAGAACTCTCATTTCCTTTATTATAAAACTGCTATAAAGCTGTGATTCATTTGGAGACAAAATGATTTCCTGCTGAGACTTTATGCGAAGTGATTAGCAGGTACATAGGTAATAAGCTGACCTAATATCCACACCGCGTTTCCTTTTGCTCTTTCTACCATCTCCAGCCACTCTGCAGCCTCCTTTCATTCTGAGCCGAATTGGGTATCTTCCCTTTTAGCCCGGCTTGAATATGTGGTCACATAGGAGACCATTGGCCACATAAGGTCAGTGGCGATCAAAAGGTAAAGAAAACAGTCTTTTTCCAAATGACCTTTTGAGATTTTCATCTATGAACATCTGCTTTGTGCTCTCCCTTAATGAATTCCCAAGGTTCTTCTTTTAAGATGGGCAGCGTGGCCTCTCCTTTGAGAAGGGGGTTGCTGTTTGCAAGTCTTGCTATTACCCCTGGTTTTGATTCTTCATCTCAGGGGCCAGAGCACATATTGAATCCTCCCCACATCCCTGCCACCTGCCACCACCATTAAGTGCTGCACGGTTTTTTCATAAGAATAGAACCTGATCAGTCCAGTAAGCGGCCTGGTACCCCAGTGTTCCTTGTTCTGTCTTGAAAGAAGCACCCAAATGTCCCCTCTGTACCCCATTACACATATAATATCCATTAACCCGATCTAATGACATCAGAGTGATCATGGTTAATTATAGTGGCTGCCTTTTAGTGAAGTCCTACAGGGAACCTTCCATAAACTTGGTAACTTCACAGCAACTTAAGTGTTATTGTTCCCATCTACAGGTTAGGAAAGTGAGGCTTAGAAAAGTTAGGTGTCTTGCTTTAAGCCACATAGCTAGTAAATGATGGAACCAGAGTTGCGTAAACTCAGGGTTTTTTGTTTGTTTGTTCTGGCCCTAGATCCTAGGCTCTTTCCACAATGCCATATGTTGTGTCTCTGAAGTGGATATTTCAGCCGGTGTATAACATGATGAATTTCGTGTTTAGTACTGTGATGAATAAAAATAGATATTTAAAAAATATCATTTAAACTTCTTATTGATTTAAATTGCCTTTTATCTGTTTTGTGAGAACTTTTAAATAAACAATGAAAAGAACTTACATTTACATAATTTAAGAATCGAATTATTTTGATTCTTAAATCAAAGATTTAAGGCTAATCAAAGATATAGCCATGGTCAATGCCATAAGTCTGGTGTCTATAGTTGTAAGACAATTTCCTAGCTGCTTCAGAAATCTTTTCTGCTATGCCTCCAACATCAAACTTATTAAAACCCCTTCAGCGATGGAGAGCTCCCTCCCTCTCTTTGTAGCCCATTCTACAGCATTAGATGGTTTTTTATTAAGTGAAACCACAGGAAATGGCCATTTTTTAGGTCGAAATGATCCCGTATCAGCAATGTAATAAGTTCAACCTGTATGGTGAGGTCACATCTACTTCTTTGTCCCATTCACTCATTTGCCTTCATTCTGCCTTCACTGTAGCACCAGGGAAGGTTCCCCCTTGCACTTGACCAGGGTCCTATGGACATTGAAATGTCCTTCCTTATAATTCTCTTCTCTTGTCTATTTTTTTTCACCAACTGCTCTTCAGATGTCAGGGTTCCTAGCTCCTCTATCACCTTGCTGCTTTTTTTTCTGGAAGTATTATAGGCAAGTCAAAGAACAAACAGCATACATTCTTTCACTCAACAAATGTGTTCAGGGTCAGGGACTCTTCCAGGCACTGGAAATACCGAGATACCTTTGGGGCATTTACAACTTACTGGACAGAAAATAAGCAAATAGTATAATATAATGCCAAATAATATAATTCCAGAGTGTGATAAGCGCTCTGAATAAGCAGAAGAAGGGAATACAGAGTCTGGGGGAAAGCTGGATGGGTGGATCTCTTTCCACAGAAGGGTGAGGAAAGGCCTAAGACCTTGAGTTGAGCCCCAGATAAATCTGTTGTCCACCATGTGTGTGTTGTTACATAAAACAATGTAAGTATCTATCTTTTTAAGTGACCAGACTTTCTCCAAAAGTAGAATAGTTAAATAAATATTTCGCTAATATCTAGGATAAATTGAAGATCAAACACCTTCCTGTCACCTCCCTAGACCATGCTTTAAGTATTCTTGAGAAATAAAATAGTCTAACAAAATTATCATCTGGGTTTCTGATGTAATCAAACATATCACAACGCATCTACCTTTTAAAATGGTACGAAGTATTTCCTAGAAATTGAAATTGACATCCACAGAATTATGACGAATGAGTACCAAGGTTGCATTTCACAGCACAAGTATGACTGTCCCTATAAAACAGATTACAACTAAGCACTTTACGAGAGACTTGAATTACTACTGAAGTCAATTTCATTTCCATAAAATTCATTTCGGTTTTCTTCCCAGTATATCAAGTTGAATCTATTTTTGAAGAAAGACTGCCACTTTTCCCACCATTAGTGGCAAAAGTCCCTCCCTGGTTTTGGCATCTGTCTTCCCTGCCTTGGCTGGTGTCTTCCCTCTTCTCTCCCCTCCCACTTCAGCTGCTTCCCACTAGCCATGCCCAAACATACATAGCTGAGCAAAAACAGGCTTGTTAGATGGCTGCCCAAATCTGCGTGGGTACCCTCCTTGCCAAGCAGGGAAAGTCAGCCATTGTCCCCACTTCCCAGCGCCTCTGTCACTGCTGCTGGAGTTGGTGTGTCCCAGCAGGAAAAAGGAGCCAGGCAGCCTGTGCCAGCCTGATGGGTCACCCATAGCAGCAGCCATGGGCAGTGAGATTTCCTGCAGTGGTACCAGGACCTGCTGGATTTTACAGCATCGGTGTCATGGTGCACCCCTTAAACCTCCAGAGCAGAGGATCCCTCCCACAGTCCACACCAAATGTTGGCCAAAATGACACAAAGGGAACTTTTACTGTCATCTTTCCTGCCTAAGGAATGTGCACACAAATTGGAAGTCATGACAAGAAACATATCTTGGTTTGGAGGTTTTGTGATTTTTAGATACTCACAAGAGATAAATTCAATCTGTCCTGCTAGACGTGCTCAGGAGGAAGCTCCAATCCTATCGGAGGTGAGGCAGCTTCCGTGGACTCAGGAGGGGATCCTCCCCAAGGCTTCTGGGTTGCGCCGTCCACCTGTCATTGGATCTCAAGCACACCTGGGACACTGCCACATTAATAACAGCGATGATACTGTGTGTGCAGGCCTGGCCTAAATCCCAGGCTTGAGTTAACTGACTTAGCACTCAGCATCATGCTACAAGGTGTTATTATTATTCTGCAGCAGATGAAGAAGTGCAGCACAGAGCTGGTAAATAACTACTCACCGCCACCTGGCTGGCGGCAGGGTGTAACATCCTATGCACGCCCAGCGAGGGCGCCCTGCAGGAGATGTGTTTGCTTGGCAGACAAGTTGCAAAGAAGGCCGGTGTCACCCTCTGGGCATGTCTTCAGGACGATTTTGCAGCTCTGTTTTTCCGTCAACATCCCTTAGGATTGCTGTCATTCTAGAACTGGATAACATGATCCATTTGAAATGAGCTATTTTAGAGAAATCAGCGATAAAGCTACCAATTATATAAATAGTTTTATTATTGTTACATTTTATTATTTGTTAAAGACCACAAAGACATAGAGAGGTGGAAGCATACATTTCACTTATTTATGTATGTATATATTTATTTTGGTTTAAGTGAATTTTATTTGACCATACTTTCTCTTTGCTTTGTTATTGAGTTTAACCAAGAGTTATTTTTACCAGCCCGATCTAATAATAAGGTTATGAAACTAATCAGGCTTCACAATTTCCTAAGCAACCACCGCCCCCATGGTTTCCAACTTTTCTCATTCACTGTTGTTATGATCATGATGATGATTTTAACTCTTTTTTTTTTTTACTTCTTTTTTTTTTATACTTTAAGTTTTAGGGTACATGTGCACAACGTGCAGGTTTGTTACATATGTATACATGTGCCATGTTGGTGTCCTGCACCCATTAACTTGTCATTTAGCATTAGGTATATCTCCTAATGCTATCCCTCCCCCATCCCCCCACCCCACAACAGTCCCCAGAGTGTGATGTTCCCCTTCCTGTGTCCATGTGTTCTCACTGTTCAATTCCCACCTATGAGTGAGAACATGCGGTGTTTGGTTTTTTGTCCTTGCGATAGTTTGCTGAGAATGATTTTAACTTTTTTGTGAATTGTCCCCATAG
Seq C2 exon
GGTCTTCTGAAGACGGCCCTGGATTTCCACAAACTGGGAAAGGTGGAGTTCAGCGGCGTCAGAGGGAATGCTCTGAGTCAGCAGGTCCAGCAAATGCATGAAGAATTTCAAGAGATGTACAGGCTTCTCTCAGGATCCTCCTCCGACTGCCTGTACCTCCAAAGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-DNAH9:NM_001372:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(13.2=100)
A:
NA
C2:
PF083857=DHC_N1=FE(9.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)