DreINT0058286 @ danRer10
Intron Retention
Gene
ENSDARG00000103383 | dnah9
Description
dynein, axonemal, heavy chain 9 [Source:ZFIN;Acc:ZDB-GENE-020925-1]
Coordinates
chr12:191195-191975:-
Coord C1 exon
chr12:191742-191975
Coord A exon
chr12:191363-191741
Coord C2 exon
chr12:191195-191362
Length
379 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CTCTTTCTCACCTGCTCTAGACG
3' ss Score
7.31
Exon sequences
Seq C1 exon
GCCCGGAGTTTCCTGAACCCGGATGACATCCTGAAAGGTGATGTTCTGGAGAGTCTGCTGCGTGTTCAGGCCGCTGTAGACCTGCTGACACACTTCAAGAACACATATGAGGACAGAAGAGCCAACCTGAGCCACTACCAGAAGAACGAAGACCCAGTCAAGCCCTGGGATTTCTCTCCCCTCATGGTGTTCGTCGGCCTGGATCACTTCATGAAGAGACTCAGAACTATTGAG
Seq A exon
GTGAGGGCACTGACGATACTGGAGGAATATGACATTGCTATAGGGCTACAGGATACTGGAGATATATGTGATATTTTTGGTATTGTTGTTGAGTATTCAGGGTGTCTGCAGGGTCTTACAAAGGCTTAAATTCAGTGAGATATTGAGCTGCAAAAAAGCTTTTTCTTTTGTCTTGTTTCTAGTCTAAATATCTAAAATTTCTTAAATCAAGAAGCATTTTTCAAGTAAGAAAAAGACATTAATCAGAGCACACCAACCCTGAGCTCACACAGGCCTTCTGGGGAACTTCAGTATGTGTAATGTGTTCACGTGTCAGTGATGCAGAATGTGGGGATATATATGAAGACACGTCCGTCTGGCTCTTTCTCACCTGCTCTAG
Seq C2 exon
ACGGTGCTGCTCACTGTCATGGATATGATGAGGCTGGAGAAGATCGAGTTTGGAGGCATTCAGGGGAAATCTCTCAGCCAGATTGTCCAGCGTTTGCATGAAGACTTCCTGCAGACGTACAAATCCTTCTCAGAGAAGCCCTACGACTGCCTGGATGTTAATAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103383:ENSDART00000161178:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(18.1=100)
A:
NA
C2:
PF083857=DHC_N1=FE(12.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGTCTGCTGCGTGTTCAG
R:
AACATCCAGGCAGTCGTAGGG
Band lengths:
345-724
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]