HsaINT1011613 @ hg38
Intron Retention
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11619548-11629584:+
Coord C1 exon
chr17:11619548-11619781
Coord A exon
chr17:11619782-11629416
Coord C2 exon
chr17:11629417-11629584
Length
9635 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TTTGTGAATTGTCCCCATAGGGT
3' ss Score
10.35
Exon sequences
Seq C1 exon
GCCTCTAATTATCTCAGCCCAGAAGACCTGCTGAGAAGTGAGGTAGAAGAAAGTCAGAGAAAACTGCAAGTGGTCTCAGACACTTTGAGCTTCTTCAAGCAAGAGTTTCAGGACAGAAGGGAGAATCTCCACACTTACTTCAAAGAGAACCAGGAAGTCAAGGAATGGGATTTCCAGTCTTCTTTGGTCTTTGTGCGATTGGATGGCTTCCTGGGACAACTGCACGTGGTGGAG
Seq A exon
GTGAGTGCGCACCTCACCTCAGGCTGCCAGCCCCAGACAGAAAGAAGCAGTCCAGGGGTCCAAAAAGTGGAATAGGAAAATGCACAACACAACCTCATAGCCAACCCTCCATCAGCTGGAATAATCCATAATAAAGGTTCAATTGGCCAGTCACAGTGGCTCATGCCTGTAATCCCACTAGCACTTTGGGAGGCAAAGGTGGGTGGATTGCTTGAGCCCAGGAGTTTAAAACCAGCCGGGCCAACATGGCAAAACGCCTTCTCTACAAAAAATACAACAACAACAAAATAGCCAGGTGTGGTGTGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATGGCTTGAGCATAGGAGGCAGAGGTTGCAGTGAGTCGAAATTGTGCCACTGCACTCTAGCCTAGGCAACAGGAGCCAGACCTTGTCTCAAAAAAACAAACAAGGGCCAGGCATGCGGTGGCTCATGCCTGTAATCCCAGCATTTGGGGAGGCCAAGGCAGGTGGATCATGAGGTCAGGAGTTCGAGACCAGTCTGGTCAACATGGCGAAATCCTGTCTCTACTAAAAATACAAAAATTAGCCAGGTGTGGTGGCACACGCCTGTAATCCCAGCTACTCGGGAGGCCGAGGCAGAGAATTTCTTGAACTCGGAAGGCAGAGGTTTCAGTGAGCCACGATCACACCATTGCACTCCAGCATGGGTGACAGAACGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAGAAGTTTTAATAAATAGTTGTCATTTGGATTGACCATCACATCACATAATAGTGGTTATAGTAGAAGTTTAGGAAATCCTGATCATAGACCCATTTAGGAAGAAGGCCCAAGGAATCAATGAACTAGTTCAATTGGTTTGCAGATTGCCCATAGCCTTTGAACTGGGTTTCAAATAAACTCTGCCTAGAAAGACTGACACTGAGCAAACCTTGGCTGGGCTATAACCATTCCCGCAAAGCTGGCTGCTTTGAACTTCTCCTCCTCCACTCCCCAATCTCCAAGGCAGCTCCCCAAAGTCCAAAACGAATGAGTCCCTGTGCAAAAGAAACATGACTTTTGCTCAAAGTTATGTCTTTCCCTCAATTATTTAAAAATAAATATGGATTTTAGGTGAAGTACTACGGTGAGAAGACATGATACTATTTCTTTGGATTGTTTCAATTCTCAAAACTTAATATGTTTAACAGGTCTCTCAACATTTTACAGCTATGTGTTTGCTGATTGGACTTGGAAGGGAGGGTAATGGGCCTAATAAAATGAAATACAGACTTAAACGGATTTGAGAAATTCAGGGTTGAGTTTAAGATTAAGACAAGAGGCCGGGCACGGTGGCTCTCCCCTGTAATCCCAGCCCTTTGGGAGGCTGAGGCAGGCGAATCACAAGTTCAGGAGTTCATGATCAGCCTGGCCAACATGGTGAAATCCCGCCTCTACTAAAAAGACAAAAATTAGCCGGGTGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGTTTGAACTCGGGAGGTAGAGGTTGCAGTGAGCCAAGATCGCGCCATTGCACTCCAGCCTGGGAGACAGGGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGACAAGAGCCAGAGGGACAGGGAAGGAACAAGAATCATATTCCCAGCTGTCATGAGCAGGTTTGGAGGAAAGAGAGCTATGCTGGGAGGAAGCCATGATGAACAGAGCAAACCATGGGAGGACAAGGACAGGAGAACGTAAGATTGGATCTGTTATCAGTTCAGAAAGTATTGGTTCAGCATCACCATGTGCCAGGCACGGAGCTAGGAACTGAGATACAAAGACGACTGAAATGCGATTTCCCTGTAAGAGGCTGGTGGACCTGCAGCCACTGCAGGAGAAGGAAGACAGACTAAAGGACGAGATCCGGGAGGAAAGACACAGAATCAGGAAAGTGGGATATACTGACTGCTATCAGAAAAGTGAGATTGGGCTGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTAGGAGGCCGAGGCAGGTGGATCACAAGGTCAGGAGTTTGAGACGAACCTGACCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAATTAGCCTGGTGTGGTGACGTGCACCTGTAGTCTCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACCCGGGAGGCAGAGCTTGCAGTGAGCTGAGATCGCGCCACTGCACTCCAGCCTGGGGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGTGAGATTGATGTGTTACTGGGAGCAAGAAAGAGGGGTCTCTAGCCCAGTAGGACTTTGACAAAAAGTGGGAACACAAGAGAAAATCAGTTGTGAAACTGGAGTGGGAATTTGCCAGGGAAGACAAAGATGGGAAGGGCATAAAGAGAGAAAATGCGTGAGAGAGAAAGCCAGAAGCTAGATCTTATGAAAGGCGCACCTTAAACCCTTCATCAGGATCACAGAGACTATAAATAATTGATTATCTAGCTTTATCCTAAATGCCTCTTTTTCCCTCAGCCGTTTCCATCATGGTTGATGTACAGCCCTTCACTCCTCCTGCACTCTGTATTCCTCTCATATCCACCACCAATTCCTTTGCTGCTGTTTAGTGAGAGGTGAGGGACACTCCAGCCCCAGCCCATGCCTGGCCTGGGCTGACCACGAAGAACGAATTTCCATCACTGCCTGGCAGCGGCCATGTTTGCAGATGCTCCAGCCCTGCAGATGGCCCTGGGAATGGTAGCAGAGCATGACCCCAGGCCCTGTGCACACATGCTAATGATTTGACTTTGCATATAGACAGCTATTCTAACATCAGGGCGCCTAATCTGCAGGATATGTTCAGTAAATATAAGCAGTGATGGCCACCAGCCTCCCTAGCGTCATTACTCTCACAATAAGTCCTTTCTCAGGCTGCTGCTGCTTTCTGAATCAAGGGCACAGGTGCATAAAAAGCAGTTGCCCCCATTTAATTAGAGGATGACATGAGTGTCACCAAGCTCCCTGCCTTGCTGCCTCTCATTCTCTTACGTGTCGTTCTGTCCTTGGCTCTGGTTAGCTGCTTTGCTCCTGTGCCCAGCTGCTCCTTTTCTTTTCTTTTCTTTTTCTTTTTTTTTTTTTTTTTTTCTCGAGATGGAGTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACGACAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGTGCCACCATGCCTGGTTAATTTTTGTATTTTTAGTAGAGACAGGGTCTTTCTGTGTTGGTCAGGCTGGTCTTGAACTCCCAACCTCAGGAGATCCACCCAGCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGTGCCCGGCCAGCATTTCTTTTCTTGACTGTGTTTCCCTCTCTTTCCCTTTGTCTAATTCTTCCTCCCTTTTCACTTGGTCCCCCTTTCACTTTGTTCTCCTTCTCTATTTTCTAACTTCCCTGACCTCTTTGTTTGCCCTGAATTTCCATGTGTTTTCATCTTCCCACGGCTACTCCTTGCCCCTTTTCCTCATATTTCCTCCCCTCTTTTATTTTTAATCTCCCAAATGTCTGCTTAGATGCATCGCCCTTGCCCTTTGCCATCTTCCTCCTCCCCCAGCTCTTGCCTCCTGAGTCTGTGCAGTGGAACACAGGACTATCAGCTGTCCTCTGGCATATTTCATGTAGGCCTTTAGTTAATATTCTGTGTATCTCTGTGATCGATGCCTGATTGAAATGGGATTAATCTGCTCCTCTCCAGTAAGAATTATCATGAACTTAGCCTTATTCATCTTCTATTCTAATACAATCTATGGCCACTGAGATGATGGTAGCTGCAATTAATAAATACATGAAACACCAATGTGTTTATCTCTCTGCATGCTCTCGTCACGGGTTAGAGTGTGAAGGGCTGGTTTTTAATCCCCACAATTCTCCCAGATTTCATTTCTCTGATGTGAGTTGCTTTTTTATTCTTTCACTCTTTTTGCACAAGAGAATTTTGTTGTGCACATCCACTCTTCCTCTCTGGGTGCCTGCTAAATGCCAGAGGTGGGGCTGGCTTGGAAGAAGGGGTATACATTGCCCAGTATTTTTCGGTGTCTGCAGTAAGTGGAGTAATTGCATTTTCAGGATACCACCATTCTCCTCTGCCTTCTTATCATAACCATGATACAGGTAATCTCTTAGAGATTTAACCCTTGTGGAGGGAAGAACAAGGAATAGAAAACTAAAAAATTAACATGTTTCAAGAACCTATCCCATGCCAGAGCCTGTATCCTTGCAATCATCTTAAGAACTGGGGCCGGGTGCAGTGGCTTACGCCTGTAATCCCAACACTTTGGGAGGCCGAGGTGGTGGGATCACCTGAGGTCAGGAGTTTGAGACAAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGCGGCATACCCGTGTAATCCCAGCCACCCAGGAGGCTGAGGCAGGAGAATCGCTGGAACCTGGGAGGCAGAGGATGTAGTGAGCCGAGATCGTGCCACAGCACTCCAGCGTGGGTGACAGAGCAAGACTCCATCTCAAAAAAAAAAGAAAAGAAAAGAACTGGGTATCAGTATCTTTTCTTTAACAAATGAGCATAACTAAATCTGATACATAAATGAGCTCACCCATAGTTACACAGGTTGGAGAGGTGTAGCTGAGATTTGTACCCAGGGGGACAGCTGGTTCCAAGTACTGTCTTTGCACCAAACTTTGATATCCTATAGGGAGTTGTGAAGGTCTGTTTCCCTCCTTCCGTCCTTTTCTCCCTTCCTTCCTTCTTTCTTTCCTCCCACTTTCCTGGTTTGAGGATCCCAAACTGGTTTTGTGGTTTTATTCTGCCCTTATACACTCTGTTCTACTTTTGTACACTCAATTTTTGCCATACAATTTCTAGGTCTTTATATCAAAGTAAGTTACTCAGGTACAATTATAATTCCCATTTCATGAAAGGATCTTATTTGACTTTATGACTTACTAAGAAAATCCCAGAAGTATATAAAATCTTTGCAATTTGAATGAGCCATCAAAGTTCAAAGAGAAAAAGAGTTGTTGGGTTGCCTCTTGATTCCTTCTTTCATCCTGCCTTCCTGCTTGATGCATCAGTGCACACACACACACACACACACCGAGTTCATTTTTGCGTCATAGAGTTGTAGATTCTGCAGATCCCCTGTTTGAGTTTCTGCCTGCAGCCTCTTCCCTCCAAACAATGCAGTAAGCACCTTGGCGAGAACTCTCATTTCCTTTATTATAAAACTGCTATAAAGCTGTGATTCATTTGGAGACAAAATGATTTCCTGCTGAGACTTTATGCGAAGTGATTAGCAGGTACATAGGTAATAAGCTGACCTAATATCCACACCGCGTTTCCTTTTGCTCTTTCTACCATCTCCAGCCACTCTGCAGCCTCCTTTCATTCTGAGCCGAATTGGGTATCTTCCCTTTTAGCCCGGCTTGAATATGTGGTCACATAGGAGACCATTGGCCACATAAGGTCAGTGGCGATCAAAAGGTAAAGAAAACAGTCTTTTTCCAAATGACCTTTTGAGATTTTCATCTATGAACATCTGCTTTGTGCTCTCCCTTAATGAATTCCCAAGGTTCTTCTTTTAAGATGGGCAGCGTGGCCTCTCCTTTGAGAAGGGGGTTGCTGTTTGCAAGTCTTGCTATTACCCCTGGTTTTGATTCTTCATCTCAGGGGCCAGAGCACATATTGAATCCTCCCCACATCCCTGCCACCTGCCACCACCATTAAGTGCTGCACGGTTTTTTCATAAGAATAGAACCTGATCAGTCCAGTAAGCGGCCTGGTACCCCAGTGTTCCTTGTTCTGTCTTGAAAGAAGCACCCAAATGTCCCCTCTGTACCCCATTACACATATAATATCCATTAACCCGATCTAATGACATCAGAGTGATCATGGTTAATTATAGTGGCTGCCTTTTAGTGAAGTCCTACAGGGAACCTTCCATAAACTTGGTAACTTCACAGCAACTTAAGTGTTATTGTTCCCATCTACAGGTTAGGAAAGTGAGGCTTAGAAAAGTTAGGTGTCTTGCTTTAAGCCACATAGCTAGTAAATGATGGAACCAGAGTTGCGTAAACTCAGGGTTTTTTGTTTGTTTGTTCTGGCCCTAGATCCTAGGCTCTTTCCACAATGCCATATGTTGTGTCTCTGAAGTGGATATTTCAGCCGGTGTATAACATGATGAATTTCGTGTTTAGTACTGTGATGAATAAAAATAGATATTTAAAAAATATCATTTAAACTTCTTATTGATTTAAATTGCCTTTTATCTGTTTTGTGAGAACTTTTAAATAAACAATGAAAAGAACTTACATTTACATAATTTAAGAATCGAATTATTTTGATTCTTAAATCAAAGATTTAAGGCTAATCAAAGATATAGCCATGGTCAATGCCATAAGTCTGGTGTCTATAGTTGTAAGACAATTTCCTAGCTGCTTCAGAAATCTTTTCTGCTATGCCTCCAACATCAAACTTATTAAAACCCCTTCAGCGATGGAGAGCTCCCTCCCTCTCTTTGTAGCCCATTCTACAGCATTAGATGGTTTTTTATTAAGTGAAACCACAGGAAATGGCCATTTTTTAGGTCGAAATGATCCCGTATCAGCAATGTAATAAGTTCAACCTGTATGGTGAGGTCACATCTACTTCTTTGTCCCATTCACTCATTTGCCTTCATTCTGCCTTCACTGTAGCACCAGGGAAGGTTCCCCCTTGCACTTGACCAGGGTCCTATGGACATTGAAATGTCCTTCCTTATAATTCTCTTCTCTTGTCTATTTTTTTTCACCAACTGCTCTTCAGATGTCAGGGTTCCTAGCTCCTCTATCACCTTGCTGCTTTTTTTTCTGGAAGTATTATAGGCAAGTCAAAGAACAAACAGCATACATTCTTTCACTCAACAAATGTGTTCAGGGTCAGGGACTCTTCCAGGCACTGGAAATACCGAGATACCTTTGGGGCATTTACAACTTACTGGACAGAAAATAAGCAAATAGTATAATATAATGCCAAATAATATAATTCCAGAGTGTGATAAGCGCTCTGAATAAGCAGAAGAAGGGAATACAGAGTCTGGGGGAAAGCTGGATGGGTGGATCTCTTTCCACAGAAGGGTGAGGAAAGGCCTAAGACCTTGAGTTGAGCCCCAGATAAATCTGTTGTCCACCATGTGTGTGTTGTTACATAAAACAATGTAAGTATCTATCTTTTTAAGTGACCAGACTTTCTCCAAAAGTAGAATAGTTAAATAAATATTTCGCTAATATCTAGGATAAATTGAAGATCAAACACCTTCCTGTCACCTCCCTAGACCATGCTTTAAGTATTCTTGAGAAATAAAATAGTCTAACAAAATTATCATCTGGGTTTCTGATGTAATCAAACATATCACAACGCATCTACCTTTTAAAATGGTACGAAGTATTTCCTAGAAATTGAAATTGACATCCACAGAATTATGACGAATGAGTACCAAGGTTGCATTTCACAGCACAAGTATGACTGTCCCTATAAAACAGATTACAACTAAGCACTTTACGAGAGACTTGAATTACTACTGAAGTCAATTTCATTTCCATAAAATTCATTTCGGTTTTCTTCCCAGTATATCAAGTTGAATCTATTTTTGAAGAAAGACTGCCACTTTTCCCACCATTAGTGGCAAAAGTCCCTCCCTGGTTTTGGCATCTGTCTTCCCTGCCTTGGCTGGTGTCTTCCCTCTTCTCTCCCCTCCCACTTCAGCTGCTTCCCACTAGCCATGCCCAAACATACATAGCTGAGCAAAAACAGGCTTGTTAGATGGCTGCCCAAATCTGCGTGGGTACCCTCCTTGCCAAGCAGGGAAAGTCAGCCATTGTCCCCACTTCCCAGCGCCTCTGTCACTGCTGCTGGAGTTGGTGTGTCCCAGCAGGAAAAAGGAGCCAGGCAGCCTGTGCCAGCCTGATGGGTCACCCATAGCAGCAGCCATGGGCAGTGAGATTTCCTGCAGTGGTACCAGGACCTGCTGGATTTTACAGCATCGGTGTCATGGTGCACCCCTTAAACCTCCAGAGCAGAGGATCCCTCCCACAGTCCACACCAAATGTTGGCCAAAATGACACAAAGGGAACTTTTACTGTCATCTTTCCTGCCTAAGGAATGTGCACACAAATTGGAAGTCATGACAAGAAACATATCTTGGTTTGGAGGTTTTGTGATTTTTAGATACTCACAAGAGATAAATTCAATCTGTCCTGCTAGACGTGCTCAGGAGGAAGCTCCAATCCTATCGGAGGTGAGGCAGCTTCCGTGGACTCAGGAGGGGATCCTCCCCAAGGCTTCTGGGTTGCGCCGTCCACCTGTCATTGGATCTCAAGCACACCTGGGACACTGCCACATTAATAACAGCGATGATACTGTGTGTGCAGGCCTGGCCTAAATCCCAGGCTTGAGTTAACTGACTTAGCACTCAGCATCATGCTACAAGGTGTTATTATTATTCTGCAGCAGATGAAGAAGTGCAGCACAGAGCTGGTAAATAACTACTCACCGCCACCTGGCTGGCGGCAGGGTGTAACATCCTATGCACGCCCAGCGAGGGCGCCCTGCAGGAGATGTGTTTGCTTGGCAGACAAGTTGCAAAGAAGGCCGGTGTCACCCTCTGGGCATGTCTTCAGGACGATTTTGCAGCTCTGTTTTTCCGTCAACATCCCTTAGGATTGCTGTCATTCTAGAACTGGATAACATGATCCATTTGAAATGAGCTATTTTAGAGAAATCAGCGATAAAGCTACCAATTATATAAATAGTTTTATTATTGTTACATTTTATTATTTGTTAAAGACCACAAAGACATAGAGAGGTGGAAGCATACATTTCACTTATTTATGTATGTATATATTTATTTTGGTTTAAGTGAATTTTATTTGACCATACTTTCTCTTTGCTTTGTTATTGAGTTTAACCAAGAGTTATTTTTACCAGCCCGATCTAATAATAAGGTTATGAAACTAATCAGGCTTCACAATTTCCTAAGCAACCACCGCCCCCATGGTTTCCAACTTTTCTCATTCACTGTTGTTATGATCATGATGATGATTTTAACTCTTTTTTTTTTTTACTTCTTTTTTTTTTATACTTTAAGTTTTAGGGTACATGTGCACAACGTGCAGGTTTGTTACATATGTATACATGTGCCATGTTGGTGTCCTGCACCCATTAACTTGTCATTTAGCATTAGGTATATCTCCTAATGCTATCCCTCCCCCATCCCCCCACCCCACAACAGTCCCCAGAGTGTGATGTTCCCCTTCCTGTGTCCATGTGTTCTCACTGTTCAATTCCCACCTATGAGTGAGAACATGCGGTGTTTGGTTTTTTGTCCTTGCGATAGTTTGCTGAGAATGATTTTAACTTTTTTGTGAATTGTCCCCATAG
Seq C2 exon
GGTCTTCTGAAGACGGCCCTGGATTTCCACAAACTGGGAAAGGTGGAGTTCAGCGGCGTCAGAGGGAATGCTCTGAGTCAGCAGGTCCAGCAAATGCATGAAGAATTTCAAGAGATGTACAGGCTTCTCTCAGGATCCTCCTCCGACTGCCTGTACCTCCAAAGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174:ENST00000262442:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(13.2=100)
A:
NA
C2:
PF083857=DHC_N1=FE(9.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains