HsaINT0056885 @ hg19
Intron Retention
Gene
ENSG00000120616 | EPC1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:19876]
Coordinates
chr10:32557859-32560845:-
Coord C1 exon
chr10:32560482-32560845
Coord A exon
chr10:32558064-32560481
Coord C2 exon
chr10:32557859-32558063
Length
2418 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
ATTGAACTTTATTTCAACAGGGA
3' ss Score
6.53
Exon sequences
Seq C1 exon
GAGTATACAAGGGCTTACACCTCAGTAGTACTACACCAACAGCACTTGTACATACAAGTCCATCAACGGCAGGTTCAGCTTTGTTACAGCCTTCAAATATTACACAGACTTCAAGTTCCCACAGTGCACTGAGTCATCAAGTAACTGCTGCCAATTCTGCAACAACTCAGGTTCTGATTGGGAACAACATTCGATTAACTGTACCTTCATCAGTTGCCACTGTAAACTCTATTGCCCCAATAAATGCACGACATATACCTAGGACTTTAAGTGCTGTTCCATCATCTGCCTTAAAGCTGGCCGCTGCAGCAAACTGTCAAGTTTCCAAGGTCCCATCTTCATCCTCTGTAGATTCAGTTCCAAG
Seq A exon
GTGAGTAGTTATTTTTGCCTAACATACCTGGAATAAGAGATCTAACTTCAGTCCTCCAGCATCGTTCTTTACCTATTTCTTTGTGTTTCTTGTTCTTTTCCTTTTATACATTGAAAATGTATAGTTGAGAATTGATCACTTATTTATTCAAGAACTAAACAGTTCTTGAACACTTAATTCAATATTAAGAATTTGAACTAACTGGTATAGTGAATGTTGCATATATGATTTGGAACATCCCTTTCTTACTATAACAATAGTTATACCAGGTGCAGTGGCTCACGCCTGTAATCCTAGCACTTTGGGAGGCAGAGGCAGGCAGATCACCTAAGGTCAGGAGTTCGAGAACAGCCGATCCAACATGGTGAAAGGCCACCTCTACTAAAAATACAAAATCACCCGGGCATGGTGGCGCATGCCTGTAATCTCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGTGGAGGTTGCAACCAAGATCGCACCATTGCACTCTGGCCAGGGCAACAAGAGCTAAACTCTGTCTCAAAAAAAAAAAAAAGCGTATAATGCTCTCAGTTTTCTTCCGTCTTTGGATGGAAGGAGTTCTCCTGAGAGCGTTTCTTTTATGACTTTTTTTCCACAGCTTCTCATGTAAACAGGTAGAATTGATAGAAACCCCTGCCCCATCACTGGTATGCTAAGCTATTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACCGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCACAATCTCAGCTCACTGCAATCTCTGCCTCCCAGGTTCAAGTGATTCTGTCTCAGCCTTCTGAGTAGATGGGATTACAGGCATACACCGCGATGCCTGGCTAATTTTTGCATTTTTAGCAGGGACGGGGTTTCACCATGTTGGCCATGCTAGTCTTGAACCCCTGACCTCAGGTGGTCAGCCTGCCTTGGCCTCCCAAAGTGCTGGAATTACAGGCATGAGCCACCACGCCCGGCGTTAAGCTATTCTTATTAATGTAAAGACTTACAGTATTCATGCCAGGTCAACTCTAAATTGAACCATTATTTTTTGTGCTAACTTGCCGTCTTGGATTTCAGTAGACAGTTGAGAATTTTGCTTATGCTCTATTATGTTGTAGAATTAAGGGTAGTTAAAATCCTGCTGTCTACAAGGTACTGTGGGAGAAACAAAAGAAAAAGACAGGTGTTTTCAGTTTAGTTAGCAGACAAGCATAAAAGAGTGAGAAGTCCAATAATGCTAATTGTAGATATCACAAAGCATTATATACTTGTTAAATTAATTGTATAGATGATGGCTGTAATTCAGTATAAGGAGAAATCTTTTTTTGCACAGGGAATTCTGGGACTCTTCTAACAAAATAAGATCAGATCCAATCTGTGTTAGTCTTCGGGCAAAGAGGAGAAAGAAAAAGCATTTCTGGCAGGTGGAGTGAAATACAAATTTGAGGCTGAGTGAAAATACAAAGTTGAGGAAATACAAGTGTTTAGAAGTTAACAAGTAAACTGGTTTTTGTATAGGCTCAGGAAGGTTAGTAGTTTAAATTGGAATGGCAGGAGAAGCCATTCCAGATTCCTGGAGCACTTTAAATGCCAGACTGGTAGACTGTCTCAGCCAGGAGTGGCCCAGAAGAAAGCAGGGTTTGTAGCAATGAACTGTGGCCTGTAGTTTCCAAACCATGCATCTGCATCTGCTTCTGAATTTAAGTAACAGTCATTGTCTGCTTAATGCCAATCCATTCTTAATAGTATTCTGGGTCTAATTATATAGCTCATCTGTCAGCTATAGTTCTGACTCATATCATGATTTTACTGCTCTAGAATTGTTTAACCATGGAATATTTGCCATGTATAGAATTTTCATATCACATGTCCTTTTGTTTTTAAAGATGAAGAAACTGAGACGCAGAGAAGTTAATGTATTTCTCTAAGGACACTCAAAAGTCTAGACTGTAGAACCACTAGGGCCCTCGAGCTCTGTGGCTGTGCCACTCAGCTCCATGTATTAGACTGATTTAAAGCCTGACACAAATCTCAGTTATGTTTGTTTCCTTTTTAAAAACTCTTTTGAAAGGTTTAATAGAGAAGGAACTTGAAACAACAATTACTAAAACATGGGAATTCTTTGTTTTTAACATCTAGGTTGCTTGAGTACTACTATAATTTTGATGGTAATGTAGTTGACTGTGGAATTTATTTATAGTCAACATTAGCCTGATTTCTGATAATAAACTATAAAGATTCGTATTCCTCTACTTGCTAGCTTGTTCCCAAAGAGTCCAATTTCTTCCTGTTAATAAAAATAAACTTTTTGTTGGGAAGATAATGTTCATTTGCTGAATATTTATGTTGTAGATAAGTAATTGATTGAACTTTATTTCAACAG
Seq C2 exon
GGAAAATCATGAATCAGAAAAGCCAGCACTGAACAACATAGCAGACAACACAGTAGCGATGGAGGTGACGTAGCTTCCTCCGAGTGGAACTGCAGCCTGGGGACTTGATTAGGTGCTATGCATCAGTAGCATTTTGAATGCAAGGGATGATGGAAAGCAGCACATGCGTTTCTGTGGCAGCTGTGGGGACTTGACAGCAATGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120616-EPC1:NM_025209:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.792
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=FE(47.5=100)
A:
NA
C2:
PF067527=E_Pc_C=PD(9.0=92.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)