RnoINT0055452 @ rn6
Intron Retention
Gene
ENSRNOG00000014834 | Epc1
Description
enhancer of polycomb homolog 1 [Source:RGD Symbol;Acc:2324280]
Coordinates
chr17:57304933-57308077:-
Coord C1 exon
chr17:57307714-57308077
Coord A exon
chr17:57305305-57307713
Coord C2 exon
chr17:57304933-57305304
Length
2409 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CGGAACTTTTATCCCAACAGGGA
3' ss Score
8.42
Exon sequences
Seq C1 exon
GAGTATACAAGGGCTTGCACCTCAGCAGCACTACACCAACGGCGCTTGTACATACGAGTCCTTCGACCGCAGGTTCAACCTTGTTACAGCCTTCAAATATTACACAGACTTCGGGTTCCCACAGCGCACTGAGTCACCAAGTAACTGCTGCCAACTCTGCAACAACTCAGGTTCTGTTTGGGAACAACATCCGATTAACTGTCCCCTCATCTGTCCCCACTGTCAACTCTATCGCCCCAATAAACGCACGGCATATACCTAGGACTTTAAGTGCTGTTCCGCCATCTGCCTTAAAGCTGGCTGCTGCAGCAAACTGTCAAGTTTCCAAGGTCCCCTCCTCATCCTCTGTAGATTCAGTTCCAAG
Seq A exon
GTGAGTAGTTCTTTGAAGATTAAATGTCTGAAATGTAAACACCTAACTTGCCTCCTGAAGTGGCTATCCACCTAAGTCTTCTCTTCTTTTCCTTTTGTGTATTGAATATATATGGATATATATATATGAATACATGAATGAACCTTCGCTTACTCAAGAACTAAGCAAGCGGATGTAATAATTCAGTGTTGGTTGAATTCAGTCTTAAGACCAGGCCAGTCCACTCACTGGGACAGTCAGTGTTGCTTCTGGGGCCCGGACCTCCCCTAATTGAGCAGTAGCCTCGAGTGTCGTCACTCTTGTGTGGCTTTGGTGGAGGGAGGCCTCTTTAGGTGCTGTCATGCTGTTGATGGATCTCATCGGTGGCTTACTGTGGGGTAGACTTGGTAAAGCCTCCTTCGCCAGTCTGCTCGCTACTCATTGTGGAAATGCTGGCAGGCCTGCTGACATCTAATAAGCCGTGGCTTTCTCTGCTCACTGACCTTCTTGATTTCAGGAGTTTAAGGTTTTTGTCAAGGTTCCATTTTAACTATAACTATTAATTTAACTCTGTATTAACTAATTAAAATCCTATTGCTACAAAGTACTAGGAGAAAAGAAACAAAGACCTGCATTATTCAGATTAGCAAGAAATAAGCTTAAAACATGAATGTGGGTGTTAAAACAGTGCAGGTAATAGACAGAAGCCCTTCTAGGTTTGTCTCAGATCAGCGTGTGTTGCCCAGTTCATTGTATTGACAGTTGCTCTTGTTTTAAAACCGAATTGTGTGTTCTATGAAATATCAGACCCCACTTGATTGGGTGAAGAGAATGTGTATCATAAGTTTGAGTGGGCAAAGCAGAAATAAAAATTGGAGAAGATGGTGCTTAGCGGTTAACATTGCTGCCTAGAAGGCCAGTGCTATGCTTAGACCAACACTGAGACTTCAGCAGAGAGCGTTCGGGAGAGCAGCTGTGCAGGAGCTCACTTTGCACACCCACAGGCCCTGTCTACATTTATCTGTTCAGTACCAGGAACGCATTGTTGGTCTGATCATGGCTGATCAGTGGACTAGTTCTCCTCTTCCACATCACCAATCATGACTTTCATTGCTGTAGAACATGACAAATATGGGGACATTTACAGTAGATGGGACTTCTCATATCCCTGTCTTTACCCAGTGTTCCAGTCCTGTGTCTGTCTCACTTAGTGATGTTGATTGAGACCTAGATTTAAAGTCCCATCGTGAATTTTGGACATATTTGTGTCTGTGCTGGGTTGTTAAGAATTTTGGACATATTTGTGTCTGTGCTGGATGATTGTTAAGAATTTTGGACATATTTGTGTCTGTGCTGGATGATTGTTAAGAATTTTGGACATATTTGTGTCTGTGCTGGATGATTGTTAAGAATTTTGGACATATTTGTGTCTGTGCTGGATTGTTAAGAATTGTGGAGATATTTGTGTCTGTGCTGGATGATTGTTAAGAAAAGCTTTGGGTTGGGAGGAGGAGCTCCTCCGTGGGCAGAGGCGCTTGCCGTCAAGCCTGACAGCCCGCGTTGGTCCGTTGTATCGTGTGGTGGAAGAAGAGAAGCAGTCCTGCAGCTTGCCTCTGACTACACAACGTAATTGTGTAAAGGCCGAAAAAGAGTTCAGGGCCAAAGAGAACTACTCAGTGCTTGCCAGTACACGCAGGAGCAGCTGAGTTCATAATCCACATTTTTAAAGAAGCTTCACGTGTTGAGTGCATGACCCTACATTGTGGGGGTTACAGGAAAGGAAGGGATCAACTCCATGAACTTCAGCTTCTCTCAGAAATTAAGGTGAAGACGGATAGAAGTGACACTCGCCATCCACTTGTGGCCTCCATGTGCACGCACATGTGTGTACACACTCACACACATCCCAAAACGATGATAAAGGTTTGGGGCTAACATGATGGCTCCATGGGTAAAGGCCCTTGCCACCAAACCCATCAAGCTACGCTTGATCCCAGAACCTATGTGGTGGAAGAAAAGAACTGACTCCCAAAAGTTGAGCTGAGATACTCGAGTGAGCACACGTGTGTATGCACATATGTACTAAGTAAGTAGATAAGCGTAAGAAGGGAAGTCGGCTGTGGAAGGGAGCTGCTGTAACTGTCAGAGCTTGAGACGTTTCGGTGTTGAGTGTGTCTGTATCTTTGGGTCACTTGAGTTCTTGGACAGTGTTTTGGCAGTTGGCATGGAGTTGACTGTTGACCCCTGATATACTTGATTTCTACTTGCCTGTTTTTCATAATTACGAAAATTCCTAATCCTTCGTCCCCTTGCCCCATAAGTGACCTTTCTTCCTGCTGTTAAAGATAACTAAGGCTTTTAAAGGAAGGACGGCCTTCACTGGCTCAGCTCGTACATGACCATTGACTAACGGAACTTTTATCCCAACAG
Seq C2 exon
GGAAAATCATGAATCAGAAAAGCCAGCACTGAACAACATAGCAGACAACACAGTAGCAATGGAGGTGACGTAGCTTCCTGGGAGCAGGACTGCATCCTGGGGACATGGTCAGGTGCTATGCATCAGAGCGTTGGAACGCAGGGAGGATGGAGTGCGTAGGCGGTTCCGTGGCAGCTGTGGGGACTCGGCAGCACTGCGCACCTCTCGTGCTTCAACCTTTCTTTTCTTATTGTTAATAGGAAAAAATCAACATCTGTAAATTAAGAATACAGCAATTATCTGTACAGTACTGCATATTTGTAATACCCTTGTATATATGTTACTTGAATACAGAACTGTTCATTTGTGATGCTTTGCACTTGGGGGCGGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014834:ENSRNOT00000019968:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.418 A=NA C2=0.833
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=FE(52.2=100)
A:
NA
C2:
PF067527=E_Pc_C=PD(9.9=92.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]