HsaINT0057794 @ hg19
Intron Retention
Gene
ENSG00000196678 | ERI2
Description
ERI1 exoribonuclease family member 2 [Source:HGNC Symbol;Acc:30541]
Coordinates
chr16:20814118-20814838:-
Coord C1 exon
chr16:20814755-20814838
Coord A exon
chr16:20814246-20814754
Coord C2 exon
chr16:20814118-20814245
Length
509 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
3' ss Seq
TTGATTATTCTTTCATTTAGTTG
3' ss Score
6.53
Exon sequences
Seq C1 exon
AGCAGTTGTTTGACTACTTAATTGTCATTGATTTTGAATCGACATGCTGGAATGATGGGAAGCACCACCATAGCCAGGAAATAA
Seq A exon
GTAAGTCTGGGCTACGAATGGCCAAAGCTGGCACTAGATGAGTCACTTTAAAGTTTATAGATCTGAATCAGCCAAAAGTTTAAGAAAACAGGATGGTCTATGCATTGGTAGTTTAATGCAAAACTTATGTTGAATAAAAAAGAGCAAAATCTCAAATACCTAAATGTGTTATTATATAAAATAGTTGTTTTATATTACATACAACACCTCAATGGCATAGAAACTGAAAAAAATGCCTTTGCAAAAAAAGTAAATTTTATATTCCATATGGTTTTTATATTTATTTAATTATATTGTTTTCTTTTAAGACAACATGCTCATAACTTCAATATTTTGACTTTAGCATAACTTTATTATAACCTTTATGTCACACTGCTTTGGTCATTTTAGTATGCTTTTACTGAAAACTGGTTGTTTAATTAAAATGGTAACATGTTTAATTTAGGATGATTACAGGATTAATTTAAAAATTATTTATTCAACTGTCAATTGATTATTCTTTCATTTAG
Seq C2 exon
TTGAGTTTCCAGCAGTGTTGCTGAACACATCAACTGGACAGATTGACTCTGAGTTCCAGGCTTATGTTCAACCTCAGGAACATCCAATTCTTTCAGAATTTTGCATGGAATTGACAGGCATAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196678-ERI2:NM_001142725:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PU(11.1=72.4)
A:
NA
C2:
PF0092919=RNase_T=FE(22.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGTTGTTTGACTACTTAATTGT
R:
TATGCCTGTCAATTCCATGCA
Band lengths:
206-715
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)