GgaINT1012444 @ galGal4
Intron Retention
Gene
ENSGALG00000026038 | ERI2
Description
ERI1 exoribonuclease family member 2 [Source:HGNC Symbol;Acc:HGNC:30541]
Coordinates
chr14:14926732-14927428:-
Coord C1 exon
chr14:14927027-14927428
Coord A exon
chr14:14926860-14927026
Coord C2 exon
chr14:14926732-14926859
Length
167 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
CTCGCTGTGCTCCGTCCCAGTTG
3' ss Score
6.94
Exon sequences
Seq C1 exon
ACAGGCCCGCCATGGCCGCGCCTCGGAGCCGAGCTGACGGCGCCTGCGCAGCGAGCGCGGGGAGCGCTCAGCCACGGGGCGGGGGCGGAGCGCGGGCTGTTTGAAGCGGCTGAGATGGCTACGAAGCGGCTGGCGAGGTGCGGGCCGCGGCACGTCCCGCCGGGGCCTCTGACGGCGTCGGGGTGCGGGGCCGGGCCGCGTCCCCCCAGGGTGGGGAGGTCTCCTCTCGGTCCGGCGCTGAAGCCGCCCCGACCCGCAGGTTGCTGGGGATGGCGCGGAGCGGCCGGAGCGGCGCGCGCAGCGGCGGGGCGGCGGAGCGGCGCTCCGAATTCGACTTCCTGCTCGTCCTCGACTTCGAGTCCACCTGCTGGCGGGACGCGCGGCAACGCCGCCCCGAGATCA
Seq A exon
GTGAGTGCTGCGCCGGGGCGGCCCGGGCTGTGTGCTGGGGGGGTGCGCTTGTGGGGGGTGCGCTTGTGGGGGGTGCGCGTGCCCGCTGGCCGCGCTTGACGCGCGCGCGGTGATGTCCCCCCGCGGCTGCCGCCCGCCCGTCGCTCTCTCGCTGTGCTCCGTCCCAG
Seq C2 exon
TTGAGTTTCCGGCCGTGCTGCTGAACGCTGCCACGGGGCGGATCGAGGCCGAGTTCCACACCTTCGTGCAGCCACAGGAGCAGCCCGTGCTCTCCGAGTTCTGCACGACGCTGACCGGCGTCACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026038:ENSGALT00000045747:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.267 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PU(10.6=44.4)
A:
NA
C2:
PF0092919=RNase_T=FE(22.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTCTCCTCTCGGTCCG
R:
CTGCACGAAGGTGTGGAACTC
Band lengths:
258-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]