GgaEX0002727 @ galGal4
Exon Skipping
Gene
ENSGALG00000026038 | ERI2
Description
ERI1 exoribonuclease family member 2 [Source:HGNC Symbol;Acc:HGNC:30541]
Coordinates
chr14:14926461-14927428:-
Coord C1 exon
chr14:14927027-14927428
Coord A exon
chr14:14926732-14926859
Coord C2 exon
chr14:14926461-14926617
Length
128 bp
Sequences
Splice sites
3' ss Seq
CTCGCTGTGCTCCGTCCCAGTTG
3' ss Score
6.94
5' ss Seq
CAGGTATCG
5' ss Score
9.18
Exon sequences
Seq C1 exon
ACAGGCCCGCCATGGCCGCGCCTCGGAGCCGAGCTGACGGCGCCTGCGCAGCGAGCGCGGGGAGCGCTCAGCCACGGGGCGGGGGCGGAGCGCGGGCTGTTTGAAGCGGCTGAGATGGCTACGAAGCGGCTGGCGAGGTGCGGGCCGCGGCACGTCCCGCCGGGGCCTCTGACGGCGTCGGGGTGCGGGGCCGGGCCGCGTCCCCCCAGGGTGGGGAGGTCTCCTCTCGGTCCGGCGCTGAAGCCGCCCCGACCCGCAGGTTGCTGGGGATGGCGCGGAGCGGCCGGAGCGGCGCGCGCAGCGGCGGGGCGGCGGAGCGGCGCTCCGAATTCGACTTCCTGCTCGTCCTCGACTTCGAGTCCACCTGCTGGCGGGACGCGCGGCAACGCCGCCCCGAGATCA
Seq A exon
TTGAGTTTCCGGCCGTGCTGCTGAACGCTGCCACGGGGCGGATCGAGGCCGAGTTCCACACCTTCGTGCAGCCACAGGAGCAGCCCGTGCTCTCCGAGTTCTGCACGACGCTGACCGGCGTCACGCAG
Seq C2 exon
AAACAAGTTGATGAAGGAGTCCCTCTGCACATCTGCTTGTCACAGTTCTTGAAGTGGCTTCAGGAGATACAAAAGGAGAAGAAAATTCTGTTCAGCTCAGATATCCCAAGGAATGCCATTCCAGAGGCAAAGCTGTGTACTTTTGTTACCTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026038_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.267 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PU(10.6=44.4)
A:
PF0092919=RNase_T=FE(22.3=100)
C2:
PF0092919=RNase_T=FE(27.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTCTCCTCTCGGTCCG
R:
AGCCACTTCAAGAACTGTGACA
Band lengths:
246-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]