HsaEX0023064 @ hg38
Exon Skipping
Gene
ENSG00000196678 | ERI2
Description
ERI1 exoribonuclease family member 2 [Source:HGNC Symbol;Acc:HGNC:30541]
Coordinates
chr16:20801203-20803516:-
Coord C1 exon
chr16:20803433-20803516
Coord A exon
chr16:20802796-20802923
Coord C2 exon
chr16:20801203-20801359
Length
128 bp
Sequences
Splice sites
3' ss Seq
TTGATTATTCTTTCATTTAGTTG
3' ss Score
6.53
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
AGCAGTTGTTTGACTACTTAATTGTCATTGATTTTGAATCGACATGCTGGAATGATGGGAAGCACCACCATAGCCAGGAAATAA
Seq A exon
TTGAGTTTCCAGCAGTGTTGCTGAACACATCAACTGGACAGATTGACTCTGAGTTCCAGGCTTATGTTCAACCTCAGGAACATCCAATTCTTTCAGAATTTTGCATGGAATTGACAGGCATAAAGCAG
Seq C2 exon
GCTCAAGTTGATGAAGGAGTCCCTCTGAAGATTTGCTTATCTCAGTTCTGTAAATGGATTCATAAGATTCAGCAACAGAAGAACATTATTTTTGCTACTGGGATTTCAGAGCCTTCTGCTTCTGAAGTAAAATTATGTGCATTTGTTACTTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196678-'14-25,'14-22,18-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PU(11.1=72.4)
A:
PF0092919=RNase_T=FE(22.2=100)
C2:
PF0092919=RNase_T=PD(39.3=79.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTTGTTTGACTACTTAATTGTCA
R:
CTGACCAAGTAACAAATGCACA
Band lengths:
240-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development