BtaEX6108987 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006448 | ERI2
Description
ERI1 exoribonuclease family member 2 [Source:HGNC Symbol;Acc:HGNC:30541]
Coordinates
chr25:18667112-18668706:-
Coord C1 exon
chr25:18668627-18668706
Coord A exon
chr25:18667881-18668012
Coord C2 exon
chr25:18667112-18667268
Length
132 bp
Sequences
Splice sites
3' ss Seq
TCATTTGATGATTCTTTCATGTA
3' ss Score
-1.02
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
AGCAGTTGTTTGACTACTTAATCATCATTGATTTTGAGTCAACATGTTGGAATGATGGGAAACGCCACCGGAGTCAGGAA
Seq A exon
GTAGTTGAATTTCCAGCTGTATTACTGAACACATCAACTGGAGAGATTGAATCTGAGTTCCATGCTTATGTTCAGCCTCAGGAACATCCAATTCTTTCTGAATTTTGCGTGGAACTGACAGGCATAAAGCAG
Seq C2 exon
GCTCAAGTTGATGAAGGAGTCCCTCTGAAGATTTGTTTATCTCAGTTCTGTAAATGGATTCAGAAGATTCAGCAACAGAAGAAAATTATTTTTGCTACTACAGTGTCAGATATTTCCACTTCTGAAGTAAAATTATGTGCGTTTGTTACTTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006448-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PU(10.1=70.4)
A:
PF0092919=RNase_T=FE(22.8=100)
C2:
PF0092919=RNase_T=FE(27.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTTGTTTGACTACTTAATCATCA
R:
CTGACCAAGTAACAAACGCACA
Band lengths:
236-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]