MmuEX6013619 @ mm10
Exon Skipping
Gene
ENSMUSG00000030929 | Eri2
Description
exoribonuclease 2 [Source:MGI Symbol;Acc:MGI:1918401]
Coordinates
chr7:119790234-119792348:-
Coord C1 exon
chr7:119792265-119792348
Coord A exon
chr7:119791101-119791228
Coord C2 exon
chr7:119790234-119790390
Length
128 bp
Sequences
Splice sites
3' ss Seq
CCCATGGTTCTTTTATTTAGTTG
3' ss Score
6.29
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
AACAGTTGTATGCCTACTTAATTGTCGTTGACTTTGAGTCTACCTGCTGGAATGATGGGAAGCACCACAGTAGCCCTGAAATAA
Seq A exon
TTGAATTTCCAGCAGTTTTGTTGAATACAGCAACTGGAGAGATTGAATCTGAGTTTCATGCTTACGTTCAGCCTCAAGAACATCCAATTCTTTCTGAATTTTGCACAGAACTGACAGGGATAAAACAG
Seq C2 exon
GTTCAAGTCGATGAAGGAGTCCCCCTGAAGATTTGCTTGTCCCAGTTCTGTAAATGGATCCATAAGCTGCAGCAGCAGCAGACGATCAGCTTTGCTGCTGGGGATTCAGAGCCTTCTACTTCTGAAGTGAAACTGTGTGCTTTTGTTACATGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030929-'4-7,'4-5,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PU(11.1=72.4)
A:
PF0092919=RNase_T=FE(22.2=100)
C2:
PF0092919=RNase_T=FE(27.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTATGCCTACTTAATTGTCGTTGAC
R:
TGACCATGTAACAAAAGCACACA
Band lengths:
234-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types