Special

RnoEX0032983 @ rn6

Exon Skipping

Gene
Description
ERI1 exoribonuclease family member 2 [Source:RGD Symbol;Acc:1583889]
Coordinates
chr1:189546501-189548344:-
Coord C1 exon
chr1:189548261-189548344
Coord A exon
chr1:189547171-189547298
Coord C2 exon
chr1:189546501-189546657
Length
128 bp
Sequences
Splice sites
3' ss Seq
CCCATGATTCTTTTATTCAGTTG
3' ss Score
6.33
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GACAGCTGTATGACTACTTAATTGTTGTTGATTTTGAGTCTACCTGCTGGAATGACGGGAAGCACCACAGTAGCCCTGAAATAA
Seq A exon
TTGAATTTCCAGCAGTTTTGTTGAATACAGCGACTGGAGAGATAGAATCTGAGTTTCATGCTTACGTTCAGCCTCAAGAACATCCAATTCTTTCTGAATTTTGCACAGAATTGACAGGGATAAAACAG
Seq C2 exon
GTTCAAGTTGATGAAGGAGTCCCCCTGAAGATCTGCTTATCTCAGTTCTGTAAATGGATTCATAAGCTTCAGCAGCAGAAGAAAATCAGTTTCGCTACTGGGGACTCAGAGCCTTCTACTCCTGAAGTGAAGCCCTGTGCTTTTGTTACCTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014673_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.012 C2=0.066
Domain overlap (PFAM):

C1:
PF0092919=RNase_T=PU(11.1=72.4)
A:
PF0092919=RNase_T=FE(22.2=100)
C2:
PF0092919=RNase_T=PD(40.4=83.0)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
ALTERNATIVE
Chicken
(galGal3)
ALTERNATIVE
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGTATGACTACTTAATTGTTGT
R:
CAGGTAACAAAAGCACAGGGC
Band lengths:
234-362
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]