RnoINT0056307 @ rn6
Intron Retention
Gene
ENSRNOG00000014673 | Eri2
Description
ERI1 exoribonuclease family member 2 [Source:RGD Symbol;Acc:1583889]
Coordinates
chr1:189546501-189547298:-
Coord C1 exon
chr1:189547171-189547298
Coord A exon
chr1:189546658-189547170
Coord C2 exon
chr1:189546501-189546657
Length
513 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
ATTTGCGGCTCTCTTATCAGGTT
3' ss Score
10.46
Exon sequences
Seq C1 exon
TTGAATTTCCAGCAGTTTTGTTGAATACAGCGACTGGAGAGATAGAATCTGAGTTTCATGCTTACGTTCAGCCTCAAGAACATCCAATTCTTTCTGAATTTTGCACAGAATTGACAGGGATAAAACAG
Seq A exon
GTATGATGCAAATTTTAGAAGCTCAAAAATGTCAGCTCGTGAAAGAAAAATAAAAGCTACATACCACTTGGAATTAAATTAATTCAGCGTTAGGAGAAATGCTATCTCCTCAGAAGACCACTAGAATCCTGAAAAACTCAGAAGAGTGCTACAAACATAAAGGCCAAGAGTTGCAACTCAGTGTGAGATGTTCACCTAGGATGGGGGAAGCCCAGGGTTTGCCTTCCGGTTACTTTTACAGAACTAATAATGTGACACACTGTCTTTATTTCTGTGAGACTGGACTTACAGATCACACTTCTGTGAAACTTTAGAGTTACCAGCCTAGTTTCTGTTTCCATGGTGAATTCAAGTCTGGACTATTTCTTGCCTGAATGTGTTAAATCTTCTCACTAGGTAAACTCGGTCAGTCAGAACCTCTTCTCCGTTCTGCCCCCACAGTGCAGAGTTGCGATAAATGCTCAGTGCCTCAGAAGTTCATTGTTGAGCTCAGATTTGCGGCTCTCTTATCAG
Seq C2 exon
GTTCAAGTTGATGAAGGAGTCCCCCTGAAGATCTGCTTATCTCAGTTCTGTAAATGGATTCATAAGCTTCAGCAGCAGAAGAAAATCAGTTTCGCTACTGGGGACTCAGAGCCTTCTACTCCTGAAGTGAAGCCCTGTGCTTTTGTTACCTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014673:ENSRNOT00000019747:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.066
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(22.2=100)
A:
NA
C2:
PF0092919=RNase_T=PD(40.4=83.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATTTCCAGCAGTTTTGTTGA
R:
CAGGTAACAAAAGCACAGGGC
Band lengths:
279-792
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]