MmuINT1009686 @ mm10
Intron Retention
Gene
ENSMUSG00000030929 | Eri2
Description
exoribonuclease 2 [Source:MGI Symbol;Acc:MGI:1918401]
Coordinates
chr7:119790234-119791228:-
Coord C1 exon
chr7:119791101-119791228
Coord A exon
chr7:119790391-119791100
Coord C2 exon
chr7:119790234-119790390
Length
710 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
TTTTGTGGCTCTCTTATCAGGTT
3' ss Score
10.28
Exon sequences
Seq C1 exon
TTGAATTTCCAGCAGTTTTGTTGAATACAGCAACTGGAGAGATTGAATCTGAGTTTCATGCTTACGTTCAGCCTCAAGAACATCCAATTCTTTCTGAATTTTGCACAGAACTGACAGGGATAAAACAG
Seq A exon
GTATGATTAAAAAAAAAGCCAGGTATGATGCAAATTTTAGATACTCAAAAAGTCAGTTTGTAAAAGAAAAATAAAAGCTACATACCACTTGAAATTAAGTTGATTAGGTGTTAGGAGAAATGGTGTCCCCTCTAAAAGTCCACTGCAGGGCTGAAGAGGTGGCTCAGTGGTTAAGAGCACTCACTGCTCTTCTGAAGGTCCTGAGTTCAAATCCCGGCAACCACATGGTGGCTCACAACCATCCTTAATGAGATCTAACACCCTCTTCTGATATGTCTAAAGACAACTACAGTGTACTTACATATAACAATAAGTAAACCTTAAAAAAAATAAATAATATAAAATAAAAGTTCACTGGGATCCTGAAAAACTCAGAAAAGCCCTATAAACATAAAGGTCAAGGGTTGCAGCTCACTAGGAAGGGGGAAGCCAGGGGTTGACCTCCAGAGAGAGTTTATTTTACAGAGCTAATAATACAACTCACTGTCTTTTATTTCTATGAAACTTTAGTTACCAGCCTTGTTTCTGTTTCCATGGTGAATTCAAGTCGGCGCTATTTCTTGCCTGTACGCGTTAAATCTTTTTACTAGGTAAACTTTGTCAGCCAGAACCTCCTCTGTGTTCTGTCCCCCACAGTGCAGAGCTGTAATAAATGCTCAGTGGCTCAGAAGTCCATTTGTTGGATTCAGATTTTGTGGCTCTCTTATCAG
Seq C2 exon
GTTCAAGTCGATGAAGGAGTCCCCCTGAAGATTTGCTTGTCCCAGTTCTGTAAATGGATCCATAAGCTGCAGCAGCAGCAGACGATCAGCTTTGCTGCTGGGGATTCAGAGCCTTCTACTTCTGAAGTGAAACTGTGTGCTTTTGTTACATGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030929:ENSMUST00000150844:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(22.2=100)
A:
NA
C2:
PF0092919=RNase_T=FE(27.5=100)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGCAGTTTTGTTGAATACAGC
R:
CTGACCATGTAACAAAAGCACACA
Band lengths:
278-988
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types