Special

HsaINT0057795 @ hg38

Intron Retention

Gene
Description
ERI1 exoribonuclease family member 2 [Source:HGNC Symbol;Acc:HGNC:30541]
Coordinates
chr16:20801203-20802923:-
Coord C1 exon
chr16:20802796-20802923
Coord A exon
chr16:20801360-20802795
Coord C2 exon
chr16:20801203-20801359
Length
1436 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
TTTTGTGACTCTCTACTCAGGCT
3' ss Score
7.95
Exon sequences
Seq C1 exon
TTGAGTTTCCAGCAGTGTTGCTGAACACATCAACTGGACAGATTGACTCTGAGTTCCAGGCTTATGTTCAACCTCAGGAACATCCAATTCTTTCAGAATTTTGCATGGAATTGACAGGCATAAAGCAG
Seq A exon
GTATGATGCAAATCTTAAAATTCAGAAGTCAGTTTCAAAAAGAAAATAAAAGTTATTATACCATTTGAAATTAGATTTATTTAGTGTTAGGCATGATGGCTTATGCCTGTAATCCCAGCACTTTGCAGGCTGATGTTCGAGAATTGCTTGAGGCCAGGAGTTTGAGACCAACCTAGACAACATAGTGAGAACCCCATCTCTAAAAAAAAAAAAAAAAAAAATTTAAATTAGCCTGACTTGGTGGCATGTGTCTGTAGTCCCAGCTTCTTGGGAGGCTGAGGCTGAGGTGGGAGGACCACTTGAGCCCAGGAGTTTGAGGCTGCAGGGAGGTATAATCTCAGTCTATCCTGGGTGACAGACTTTGTCTCTGAAAATAAATGAATAAATAAGTAAATAAATAAATAAGATTAGTGTTATTCCAGATTCAGGACTCGATTTATGTATTTATTTATTTATTTTTCAGACAAAGGCATGCTCTGTTGGCCAGGCTGGAGTAAGGTGGCGGGGCTCACTGCAACCTCTGCTTCCTGGGTTCAGGCGATTCTCATGCCTCAGCTTCCTGAGTAACTGGGACTATAGGTACACACCACCACATCTGGCTAATTTTTATATTTTTAATAGAGACAGGGTTTCACTATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCTGCCCACCTTGGCCTCCCGAGGTGCTGGGATTACAGGCGTGAGTCACCTCAGGACTCGATTTAAAAAGCAAAGGAACATACCTGTAATCTCAGTACTTTGGGAGGCCAAGGTGGGTGGATCATCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACTTGGCAAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCAGGCATGGTGTTACACACCTGTGATTCCCACTACTTGGGAGGCTGAGGCAGGAGACTCACTTGAACCCAGGAGGTGGAGGTTGCAGTGAGCTGAGATCATGCCACTGCACTCCACCCTGGGCAACAAAGCAAGACCTCGTCTCAAAAAAAAATAAATTTTAAAAATTAAATAAATACACAGCAAAGGAAGAATAATGTTATAAAAATGAGGATCAAATTGATTTTATGGAAATTAAGTGACTCAAATTTGTCTATGATTTATGTCAGTCTGGACTTAATGATCATATTTCTGTGTGATTTTAGTTTTTATCAACCTAATCTTTCTTACCTTGGTGGGTTCTAAATATTCTTTCTTTCCCACGTGTTTTTACCTCTTTCCACTAAATAAACTCTTTGCCAGTTAGAACCACTTTGTTATGTCTTCCCACAGTACACTGTGTTTTCATGACTTGGCATTTCTGATTCTTTTAAAACCATTAATCTTTCTCCACAGTTATAAAACATGCTAAATAATAATGGAATTTGATTGTTGAATTCAGCTTTTGTGACTCTCTACTCAG
Seq C2 exon
GCTCAAGTTGATGAAGGAGTCCCTCTGAAGATTTGCTTATCTCAGTTCTGTAAATGGATTCATAAGATTCAGCAACAGAAGAACATTATTTTTGCTACTGGGATTTCAGAGCCTTCTGCTTCTGAAGTAAAATTATGTGCATTTGTTACTTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196678:ENST00000300005:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0092919=RNase_T=FE(22.2=100)
A:
NA
C2:
PF0092919=RNase_T=PD(39.3=79.2)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
ALTERNATIVE
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGCTGAACACATCAACTGGA
R:
CTGACCAAGTAACAAATGCACA
Band lengths:
270-1706
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains
  • Pre-implantation embryo development