HsaINT0058512 @ hg19
Intron Retention
Gene
ENSG00000167880 | EVPL
Description
envoplakin [Source:HGNC Symbol;Acc:3503]
Coordinates
chr17:74017948-74018308:-
Coord C1 exon
chr17:74018270-74018308
Coord A exon
chr17:74018110-74018269
Coord C2 exon
chr17:74017948-74018109
Length
160 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
GCGGCGGGTCCTGAGCACAGAAG
3' ss Score
-3.29
Exon sequences
Seq C1 exon
GATGCAGCCACCATCCGGAGCCAATACCGAGACCTACTG
Seq A exon
GTGAGCAGGAGGGAGGGTCGGGCAGGGAGGCTGCGGGTGGGCCTGGGTGGCCGCCCGGACCCTGCCCGGGGCCAGTGTTCCTGAGCGCGGCCCAATGGCGCCTTTTGCCCCCCACTTTCTGTCTCCCCACCCTGCTGCTGGCGGCGGGTCCTGAGCACAG
Seq C2 exon
AAGGCGGCGTCGTGGCGCGGGCAGAGCCTGGGCAGCCTGTACACGCACCTCCAGGGCTGCACGCGGCAGCTGAGCGCCCTGGCTGAGCAGCAGCGCCGCATCCTGCAGCAGGACTGGAGCGACCTCATGGCCGACCCTGCGGGCGTGCGGCGGGAGTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167880-EVPL:NM_001988:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCATCCGGAGCCAATAC
R:
CTCGTACTCCCGCCGCAC
Band lengths:
194-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)