BtaINT0058361 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010517 | EVPL
Description
Bos taurus envoplakin (EVPL), mRNA. [Source:RefSeq mRNA;Acc:NM_001205676]
Coordinates
chr19:56261730-56262031:+
Coord C1 exon
chr19:56261730-56261768
Coord A exon
chr19:56261769-56261869
Coord C2 exon
chr19:56261870-56262031
Length
101 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
CTCCCTACATCCGAGCGCAGAAG
3' ss Score
0.69
Exon sequences
Seq C1 exon
GACGCGGCCACCATCCGGAGCCAATACCGGGACCTCCTG
Seq A exon
GTGAGCCCCAGGGCGGGCTGGGTGGGCTGCCTGCACCGTTGACGAGGCCAGCCTTCCTGGGCGCAGCCTGACGGTGCCTCTCTCCCTACATCCGAGCGCAG
Seq C2 exon
AAGGCGGCCTCGTGGCGAGGGCAGAGCCTGGGCAGCCTGTACACGCACCTGCAGGGCTGCACGCGCCAGCTGAACGCCCTGGCCCAGCAGCAGCAGCGCATCCTCCAGCAAGACTGGAGCGACCACCTGGCCGACCCCGCGGGCGTGCGGAGGGAGTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010517:ENSBTAT00000013898:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.056
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043516=Spectrin=PU(40.0=77.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCATCCGGAGCCAATAC
R:
CTCGTACTCCCTCCGCACG
Band lengths:
194-295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]