RnoINT0057021 @ rn6
Intron Retention
Gene
ENSRNOG00000009343 | Evpl
Description
envoplakin [Source:RGD Symbol;Acc:1306141]
Coordinates
chr10:105112108-105112414:-
Coord C1 exon
chr10:105112376-105112414
Coord A exon
chr10:105112270-105112375
Coord C2 exon
chr10:105112108-105112269
Length
106 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TCCTTCTCTCCCGAGCATAGAAG
3' ss Score
2.07
Exon sequences
Seq C1 exon
GATGCAAACGCCATCAGGAACCAATACCGTGACCTACTG
Seq A exon
GTGAGTTCGGGCCGGGTGGGACCTCTTTGCCTCAGCCCTTCCCAGGGCCACGGTTGCCCAGGGCCCTGACACTACCCCTTGCCACTTCCTTCTCTCCCGAGCATAG
Seq C2 exon
AAGGCAGCCTCGTGGCGCCGGCAGAGTCTGGGCAGCTTGTACACACACCTGCAGGGCTGCACGAAGCAGCTGGGCGCCCTGGCGGATCAACAAGGCCGCATCCTGCAGCAGGATTGGAGTGACCTCATGCCTGACCCCGCTGGTGTGAGGCGAGAGTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009343:ENSRNOT00000012373:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.074
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCAAACGCCATCAGGAAC
R:
TCATACTCTCGCCTCACACCA
Band lengths:
200-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]