HsaINT0059023 @ hg19
Intron Retention
Gene
ENSG00000188107 | EYS
Description
eyes shut homolog (Drosophila) [Source:HGNC Symbol;Acc:21555]
Coordinates
chr6:64497998-64499117:-
Coord C1 exon
chr6:64498951-64499117
Coord A exon
chr6:64498143-64498950
Coord C2 exon
chr6:64497998-64498142
Length
808 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
GTTTTTTTTCCCTTTCGAAGGTA
3' ss Score
9.59
Exon sequences
Seq C1 exon
GGTTGAATGGCGATGACTTCCTGGCTGTGGGCCTGCTCAATGGCAGTGTGGTTTATAGTTATAACCTGGGGTCTGGCATAGCAAGCATCAGGAGCGAGCCCCTCAATCTGAGCCTTGGAGTCCACACTGTTCATCTGGGCAAGTTCTTCCAAGAGGGCTGGCTGAAG
Seq A exon
GTAAAGAGTCATTCCTTCGTCACTTCCACAAACTGAGAGCACTAGTATATTGTCAGATCTGTGCTAAGATACAGAGGTGAATAGCCCATGATGCCTACATCCACGAAGTTCACAGACTATTGTACCAACTAGGGGAATAGAGAGATGATTACAATTAAGTGGTGTGAGAACAAATAAGAGGGATTACTAACACAGATAAGGGTGAGAGAGAGGATTCAGAAAGTGCTTCCCAGAGAAGGTGATGCTTGAGCGTAACTTCAAATAGGAGTTAAGAAAGAGAACAATGGCCAGTATTAGCTTAAGGAATGCAAGTAGTTCAGCATGGTTTTTAGGTTGGGGGATGGGGGAGCTAGAGAAGTGGTTAGAGACAGATAAGGTCTATATTATCAAAGGGCTTAGATGTGCTAAGAAGTTTATATTTTTATCTAAAGAACTATGAAGAGCTACTTAGGAAGGTGGGTACCATGTTGATTTCTAATTTTTGATAAAGGACTCTGGTGGTTCTATGGAGAATTGATAGCAGAGGAGGAAGGCTAAATGGAGGGGAATCAGCAGGATGCCAGCACCTAATCTTTGAAGAACTTTGATTTTGATTGAAATGCAAAACCATGACTGCTATATTAATATATCCCTGGTAACAGACACCAGCAGAGAAGCAGAGAATTGAGTGGTATCATGTTATTTCTTCAAAATTCAGGTCTTTGTAAATTTTTCATGCCAAGTTAATGGGAAATAACAAAAGAGTATCTTAACATTTCACCCTGGGGAATTAATTCCTTTTTTAATAGGTTTTTTTTCCCTTTCGAAG
Seq C2 exon
GTAGATGATCATAAAAATAAATCCATTATCGCCCCAGGAAGACTGGTTGGTCTCAATGTCTTCAGTCAGTTTTATGTAGGTGGCTACAGTGAATACACTCCAGATCTCTTACCAAATGGAGCAGATTTTAAAAATGGTTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188107-EYS:NM_001142800:38
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=FE(42.0=100)
A:
NA
C2:
PF0221019=Laminin_G_2=FE(36.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGAATGGCGATGACTTCCT
R:
TGAAAACCATTTTTAAAATCTGCTCC
Band lengths:
310-1118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)