HsaINT0059438 @ hg19
Intron Retention
Gene
ENSG00000178882 | FAM101A
Description
family with sequence similarity 101, member A [Source:HGNC Symbol;Acc:27051]
Coordinates
chr12:124796364-124800568:+
Coord C1 exon
chr12:124796364-124796473
Coord A exon
chr12:124796474-124798737
Coord C2 exon
chr12:124798738-124800568
Length
2264 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
TTCCCTCCTGCCCTTTCCAGCTG
3' ss Score
11.61
Exon sequences
Seq C1 exon
CCCCCCTCCCAACTCCCAAATCCCCCGGCGTCGGAGATGAGGCCCCGGATGCTGCCAGTGTTCTTTGGGGAGAGCATCAAGGTGAACCCGGAACCCACGCATGAGATCCG
Seq A exon
GTGAGTGGGCCACTGGGCTCTGCGCGGGAGGAGGGGGTGGGGGGTTGGGTGCTGGTCCTGACTCTCTTGTGGGATGGGGGTGGGGACTAGGCCAAGCTGGGGGCTCAGGAGGCTCCCTACCCTCCAGGCAGCCCCTCTGGGTGCTGCTTCCTGGGGAGTTTGGCCGTATCTTAGCCACAGACAAAACTGATTTTAAGAGACTCTGACCCCAAGGGACCCTCTGTATCCACCCCACGCCCCCACCCCAGGTCTATTCAGCCGTTTCCCATTTCCCCATTTACCTTCTCCTCCAAAAGGCTTTTATTTTAAATCCAACCTCTCAGAAAAAATGGAAAATTATGAACATAACCACTTGTGCACCCTAACTCTACCTCCCTTCTCCTGCCAGATTTTTTTTTTTTTTGATGGGATCTCACTGTGTCACCCAGGCTGAAGTGCAGTGGTGGGATCATGGCTCACTGCAGCCTCAACCTCCTGGGCTTAAGCAATCCTCCTACCTCAGCCTCCCGAGTAGCTGAGACTGCAGGTGTGCGCCCCCATGGCCAGCTAATTTTTGTATTTTTTGTAGAGATGGGGTCTCACTATGTTGCCCAGACTGGTCTCCAGCTCCTGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCTAGAATGCTGGGATGACAGGTGTGAGTCACCATGCCCAGCCCCTGACAGATTGTTAGGTATTCACAACCAAACCATTCAGGCAACTCAGGACCGCCTTCCACTCTGTTGTCCAAGCATTAGGGGACAGTTGTCCAGCTGCTCCATGTTCTTTGTGACTGTAACTTAGGTTCTTGAGGCCACCCATGAGCTACTGCACTGTAAGTGTATTGGGTGCCCTCCCATGCATATGACGCATATGACATCTTAGGTGGCATCCGAATTGAATTAAGGCACCCCTGCTTGGGAACATCCCACATCGATTTGCCCTCCTCTGAAGCTGCTGGGGCTCAGGCTTCCCAAGGATGGAGTGTGGGATCCGTGAGTCTTACCCACATATCTATGGGGCTCTCTCCATCCACTCGTCCCTGTTGAGTGGGGCCAGCCAAGTGTCTGAGACCCACTGCCTGCTGCCCCTGCCAGCCAGGCAATGGTCCCAGGAGACAAACGAGTCCACTTCTAAATTATTTTTCAATCCCCAAACAGCCTTCATTGTCTAGTTTTTAAAATGCAAGCCAAAATTAGATCATCAGAAGCCCAGCAAGGGTGGAGGATGGATGCCTTGACCCTCGGGACCTCTGATCCCTTCACAAGTCTTCTGTGATCACCTCTGGGGGTTCAGTGGGGAATGAGATGGGGAGGATTCTCTCCTTCCCAGAGCTTCCAGTCTGATTTCCTAAAGCTCTGGACGTGGAACTGGGGGATACTAGTCGGTCACTCCTCCAAGGGTGTTGAAGGGACTTCTTGGAAAACGTATTTTGATATAATTTCAAACTTTTTAAAAGGTTGCGGCTGGGCGTGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACTCCGTCTCTACTAAAAATTACAAAAAATTAGCCAGGCATGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAAGAGAATGGCGTGAACCTGGGAGGCGGAGCTTGCAGAGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAGGTTGCATGTGCCTCTCAAACAGATTCACTGGTTGTTTATATCTTGCCCTATTTGAGAGGAGATTGGTGACATCCTGCCCTTTAGCCCCCAGATACTTCAGTGTGTCTCTTAAGAACAGGGACATCCTCTTCCATGACAGCAGCATAGTTGTCAACGTCAGGGAAGTGCACACGGTGACGCCAGCACCTAACCCACACGACACGGCTCAGTTTCACCCATCGTCCCGATAAGGTCCTTTCCTGGCTTACTTTTCTCCCCAGTTCAGGATCCAGTCAGGGTCCTTCATTGCGTTTAGCTGTCTCGCCTCTTTAGTCTCTGTGAAGCCAAGACAGTCCCTCAGTCCTTCTTTGACCTTCTTGACCTTGACATTTCAGAGCAGCCCACACCCGTTAGGCTTCAGAGCATCTGCCCAGGGCCCTTTCGTGTCCATGCTGAGGGCAGGGAATCGGGCTGCCCCCAATCCTGGGTTCACTCCGCTTCCCTCCTGCCCTTTCCAG
Seq C2 exon
CTGCAACTCTGAGGTCAAGTACGCCTCGGAGAAGCATTTCCAGGACAAGGTCTTCTATGCGCCCGTACCCACCGTCACGGCCTACAGCGAGACCATCGTGGCAGCACCCAACTGCACGTGGCGCAACTACCGCAGCCAGCTGACCCTGGAGCCACGCCCGCGCGCCCTGCGCTTCCGCAGCACCACCATCATCTTCCCCAAGCATGCCAGGAGCACTTTCCGGACCACCCTGCACTGCAGCCTGGGCCGGCCCAGCCGCTGGTTCACCGCCAGCGTGCAGCTGCAGCTTTGCCAGGACCCTGCCCCCAGCCTCCTGGGCCCTGCCACGCTCTGACGGGGCTGGGGCCGGCCCGGGGTGCTGGAGGAGCCGGGAGCCCTGGGGAGAAGCCGGGAGGATGGACACGATGAGCTCGGCCTGGCACTCGGGCAGGAGGCGGGAAGGGAGGCTGCCAGACCAAGGACCCGTGTGGAAGGAGGCGGCTCCCCGCTGCCTGCCCTGACCTACAGGCTAGGTGGTGGTCTCCTTGTTTTGGTGTCAAGGACTCAGTAAAAGCATCTATTTTTTTAGCACTTAAGCTGGCAAGGCGGTAGGGGCATGCACTGTTAGGTGGTGGCCACCCCCAGGGTCAGGGGAAAAGAATGGGTCCATGGAGTGCCCTTGAAGCAGAGAACAGCCCCGAGCAGTGTGAGGACAGAGGCATCCCAGCCTCAGCCGGTGGGGACGGCTGCCACTCCCCCAGAGCCCTGCCACCCCATGTGTCCTAGGCTGGTGGCCAAGGCCATGTGTGAGGGAAGAGGGGTACCTCTCTTCCCTGCTGCTGGCCTGGGGTATTTCCAAAACAGCCTTTTCGCACACATGCAGGTTGCACCGAGAGGTCTGGAGCTGTGGCTGAGCCACCTCTGGCGGATGTTGAGCCAGGAGGTTGGGCAAAGGCCGGATGCTGATGCCAGCGCTGGAGGTGGTGATACTGGGGGCGGGGAAGGCCTAGAAATACTTTGAGCCATGGCCTTGCCAGTGTCCCGTGCCCTCCAGTGTCAAAGATTTGGGGCACTGCCCGTCGAAATGGAAAGGTTGGTGCTCAGCCTCTGGAGCCTCACCTGCAGGGCGTCCCCAGCTAACACCCATCCACGCACCACCTCCAGGACGAGAACCCTTGATGTCAAAACCAAGTGCCCAGTGGAGGCGGTGAAGCTCTCGGAAATGCTGCCACCTGTGTGAGGCCGGGTCTGAACTCGAGGGAGTCGGAGCTCAGCTGTCGGTTTAAAGAGACACTGAGGGGACCGGGCTGCCGCCCTCAGCCTGCATTCCTGTGCGCAATCGATTCCGCAATGACAGCACCTTACTCCTTCCTGCGGCAGGCTCACCCCTGCCTGTGGGATGTTGTGAGAGGAACATGAGCCAGACAAAGACTTGGCTCAGGGCTCCGTGGAACAAGCCAGGATGCACGGGGAGCTGGGGGAGCCCCCAGCCTGGGGCAGCCCAGCAGGCCGCTGAACAAACACCCCAGAAGCCAGCACTGTGGCAGGGTGCTGGGGAGATGCCCCTCTGAGCCTTCCTCCCCCCTCAGACCTGAATGCACTCCACAGTTGGGGGCTGCCCCTGCCACTCCCCTGGTAATGCATAAAAGGGGAGGGGAAGGTTCCCTGGGGCTTGAGCTCCCTCTGTGGAGGTGAGGAGGGGAGATTCCGTTCACATCCAGGAGGGGCAAAATGACTGATGTATTTTTATGTATCTACACAGAGAGTGCATTTTCTCTCCAGAGATGCTGTCTGGTTAACAAAGGAATAACTTAAGAAATTGATTGATTATCTTAATAAACTGTGCAAACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178882-FAM101A:NM_181709:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.287 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF150681=FAM101=PU(19.5=96.0)
A:
NA
C2:
PF150681=FAM101=PD(79.7=87.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)