HsaINT0059438 @ hg38
Intron Retention
Gene
ENSG00000178882 | RFLNA
Description
refilin A [Source:HGNC Symbol;Acc:HGNC:27051]
Coordinates
chr12:124311818-124316022:+
Coord C1 exon
chr12:124311818-124311927
Coord A exon
chr12:124311928-124314191
Coord C2 exon
chr12:124314192-124316022
Length
2264 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
TTCCCTCCTGCCCTTTCCAGCTG
3' ss Score
11.61
Exon sequences
Seq C1 exon
CCCCCCTCCCAACTCCCAAATCCCCCGGCGTCGGAGATGAGGCCCCGGATGCTGCCAGTGTTCTTTGGGGAGAGCATCAAGGTGAACCCGGAACCCACGCATGAGATCCG
Seq A exon
GTGAGTGGGCCACTGGGCTCTGCGCGGGAGGAGGGGGTGGGGGGTTGGGTGCTGGTCCTGACTCTCTTGTGGGATGGGGGTGGGGACTAGGCCAAGCTGGGGGCTCAGGAGGCTCCCTACCCTCCAGGCAGCCCCTCTGGGTGCTGCTTCCTGGGGAGTTTGGCCGTATCTTAGCCACAGACAAAACTGATTTTAAGAGACTCTGACCCCAAGGGACCCTCTGTATCCACCCCACGCCCCCACCCCAGGTCTATTCAGCCGTTTCCCATTTCCCCATTTACCTTCTCCTCCAAAAGGCTTTTATTTTAAATCCAACCTCTCAGAAAAAATGGAAAATTATGAACATAACCACTTGTGCACCCTAACTCTACCTCCCTTCTCCTGCCAGATTTTTTTTTTTTTTGATGGGATCTCACTGTGTCACCCAGGCTGAAGTGCAGTGGTGGGATCATGGCTCACTGCAGCCTCAACCTCCTGGGCTTAAGCAATCCTCCTACCTCAGCCTCCCGAGTAGCTGAGACTGCAGGTGTGCGCCCCCATGGCCAGCTAATTTTTGTATTTTTTGTAGAGATGGGGTCTCACTATGTTGCCCAGACTGGTCTCCAGCTCCTGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCTAGAATGCTGGGATGACAGGTGTGAGTCACCATGCCCAGCCCCTGACAGATTGTTAGGTATTCACAACCAAACCATTCAGGCAACTCAGGACCGCCTTCCACTCTGTTGTCCAAGCATTAGGGGACAGTTGTCCAGCTGCTCCATGTTCTTTGTGACTGTAACTTAGGTTCTTGAGGCCACCCATGAGCTACTGCACTGTAAGTGTATTGGGTGCCCTCCCATGCATATGACGCATATGACATCTTAGGTGGCATCCGAATTGAATTAAGGCACCCCTGCTTGGGAACATCCCACATCGATTTGCCCTCCTCTGAAGCTGCTGGGGCTCAGGCTTCCCAAGGATGGAGTGTGGGATCCGTGAGTCTTACCCACATATCTATGGGGCTCTCTCCATCCACTCGTCCCTGTTGAGTGGGGCCAGCCAAGTGTCTGAGACCCACTGCCTGCTGCCCCTGCCAGCCAGGCAATGGTCCCAGGAGACAAACGAGTCCACTTCTAAATTATTTTTCAATCCCCAAACAGCCTTCATTGTCTAGTTTTTAAAATGCAAGCCAAAATTAGATCATCAGAAGCCCAGCAAGGGTGGAGGATGGATGCCTTGACCCTCGGGACCTCTGATCCCTTCACAAGTCTTCTGTGATCACCTCTGGGGGTTCAGTGGGGAATGAGATGGGGAGGATTCTCTCCTTCCCAGAGCTTCCAGTCTGATTTCCTAAAGCTCTGGACGTGGAACTGGGGGATACTAGTCGGTCACTCCTCCAAGGGTGTTGAAGGGACTTCTTGGAAAACGTATTTTGATATAATTTCAAACTTTTTAAAAGGTTGCGGCTGGGCGTGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACTCCGTCTCTACTAAAAATTACAAAAAATTAGCCAGGCATGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAAGAGAATGGCGTGAACCTGGGAGGCGGAGCTTGCAGAGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAGGTTGCATGTGCCTCTCAAACAGATTCACTGGTTGTTTATATCTTGCCCTATTTGAGAGGAGATTGGTGACATCCTGCCCTTTAGCCCCCAGATACTTCAGTGTGTCTCTTAAGAACAGGGACATCCTCTTCCATGACAGCAGCATAGTTGTCAACGTCAGGGAAGTGCACACGGTGACGCCAGCACCTAACCCACACGACACGGCTCAGTTTCACCCATCGTCCCGATAAGGTCCTTTCCTGGCTTACTTTTCTCCCCAGTTCAGGATCCAGTCAGGGTCCTTCATTGCGTTTAGCTGTCTCGCCTCTTTAGTCTCTGTGAAGCCAAGACAGTCCCTCAGTCCTTCTTTGACCTTCTTGACCTTGACATTTCAGAGCAGCCCACACCCGTTAGGCTTCAGAGCATCTGCCCAGGGCCCTTTCGTGTCCATGCTGAGGGCAGGGAATCGGGCTGCCCCCAATCCTGGGTTCACTCCGCTTCCCTCCTGCCCTTTCCAG
Seq C2 exon
CTGCAACTCTGAGGTCAAGTACGCCTCGGAGAAGCATTTCCAGGACAAGGTCTTCTATGCGCCCGTACCCACCGTCACGGCCTACAGCGAGACCATCGTGGCAGCACCCAACTGCACGTGGCGCAACTACCGCAGCCAGCTGACCCTGGAGCCACGCCCGCGCGCCCTGCGCTTCCGCAGCACCACCATCATCTTCCCCAAGCATGCCAGGAGCACTTTCCGGACCACCCTGCACTGCAGCCTGGGCCGGCCCAGCCGCTGGTTCACCGCCAGCGTGCAGCTGCAGCTTTGCCAGGACCCTGCCCCCAGCCTCCTGGGCCCTGCCACGCTCTGACGGGGCTGGGGCCGGCCCGGGGTGCTGGAGGAGCCGGGAGCCCTGGGGAGAAGCCGGGAGGATGGACACGATGAGCTCGGCCTGGCACTCGGGCAGGAGGCGGGAAGGGAGGCTGCCAGACCAAGGACCCGTGTGGAAGGAGGCGGCTCCCCGCTGCCTGCCCTGACCTACAGGCTAGGTGGTGGTCTCCTTGTTTTGGTGTCAAGGACTCAGTAAAAGCATCTATTTTTTTAGCACTTAAGCTGGCAAGGCGGTAGGGGCATGCACTGTTAGGTGGTGGCCACCCCCAGGGTCAGGGGAAAAGAATGGGTCCATGGAGTGCCCTTGAAGCAGAGAACAGCCCCGAGCAGTGTGAGGACAGAGGCATCCCAGCCTCAGCCGGTGGGGACGGCTGCCACTCCCCCAGAGCCCTGCCACCCCATGTGTCCTAGGCTGGTGGCCAAGGCCATGTGTGAGGGAAGAGGGGTACCTCTCTTCCCTGCTGCTGGCCTGGGGTATTTCCAAAACAGCCTTTTCGCACACATGCAGGTTGCACCGAGAGGTCTGGAGCTGTGGCTGAGCCACCTCTGGCGGATGTTGAGCCAGGAGGTTGGGCAAAGGCCGGATGCTGATGCCAGCGCTGGAGGTGGTGATACTGGGGGCGGGGAAGGCCTAGAAATACTTTGAGCCATGGCCTTGCCAGTGTCCCGTGCCCTCCAGTGTCAAAGATTTGGGGCACTGCCCGTCGAAATGGAAAGGTTGGTGCTCAGCCTCTGGAGCCTCACCTGCAGGGCGTCCCCAGCTAACACCCATCCACGCACCACCTCCAGGACGAGAACCCTTGATGTCAAAACCAAGTGCCCAGTGGAGGCGGTGAAGCTCTCGGAAATGCTGCCACCTGTGTGAGGCCGGGTCTGAACTCGAGGGAGTCGGAGCTCAGCTGTCGGTTTAAAGAGACACTGAGGGGACCGGGCTGCCGCCCTCAGCCTGCATTCCTGTGCGCAATCGATTCCGCAATGACAGCACCTTACTCCTTCCTGCGGCAGGCTCACCCCTGCCTGTGGGATGTTGTGAGAGGAACATGAGCCAGACAAAGACTTGGCTCAGGGCTCCGTGGAACAAGCCAGGATGCACGGGGAGCTGGGGGAGCCCCCAGCCTGGGGCAGCCCAGCAGGCCGCTGAACAAACACCCCAGAAGCCAGCACTGTGGCAGGGTGCTGGGGAGATGCCCCTCTGAGCCTTCCTCCCCCCTCAGACCTGAATGCACTCCACAGTTGGGGGCTGCCCCTGCCACTCCCCTGGTAATGCATAAAAGGGGAGGGGAAGGTTCCCTGGGGCTTGAGCTCCCTCTGTGGAGGTGAGGAGGGGAGATTCCGTTCACATCCAGGAGGGGCAAAATGACTGATGTATTTTTATGTATCTACACAGAGAGTGCATTTTCTCTCCAGAGATGCTGTCTGGTTAACAAAGGAATAACTTAAGAAATTGATTGATTATCTTAATAAACTGTGCAAACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178882:ENST00000324038:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.266 A=NA C2=0.012
Domain overlap (PFAM):
C1:
PF150681=FAM101=PU(19.5=96.0)
A:
NA
C2:
PF150681=FAM101=PD(79.7=87.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development