HsaINT0060208 @ hg19
Intron Retention
Gene
ENSG00000215187 | FAM166B
Description
family with sequence similarity 166, member B [Source:HGNC Symbol;Acc:34242]
Coordinates
chr9:35562646-35563077:-
Coord C1 exon
chr9:35562872-35563077
Coord A exon
chr9:35562698-35562871
Coord C2 exon
chr9:35562646-35562697
Length
174 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
3' ss Seq
CACAGGGGCTTCTCTCACAGGCT
3' ss Score
5.89
Exon sequences
Seq C1 exon
GTTTTGTACCCCGGGCACAGTTCATCTTTGCCAAGAACTGCAGCCAGGTCTGGGCCGAGGCTCTGAGTGACTTTACTCACTTGCATGAAAAGCAAGGGAGTGAAGAGCTACCAAAGGAGGCCAAGGGAAGAAAGGACACAGAGAAGGACCAGGTGCCAGAGCCGGAGGGGCAGCTGGAGGAGCCGACACTGGAGGTGGTGGAACAA
Seq A exon
GTGAGACCAAGAAGCTGGTGGGGAGTGCAGAGGTGTGGGAGTGGGGGTCTTACTGTGTGTCCGGGCAGTGGGGGCAGCATGAGTAGTGTGGCTGTGGGTTCAGGGGATGTGCACTTGATTGTCAGCTCCACCTCCTTGGGAGATTGTGTGACAGCACAGGGGCTTCTCTCACAG
Seq C2 exon
GCTTCTCCCTACTCCATGGATGACAGGGACCCTCGGAAGTTCTTCATGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215187-FAM166B:NM_001099951:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.616 A=NA C2=0.500
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PD(85.7=87.0)
A:
NA
C2:
PF106294=DUF2475=PU(8.5=27.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGGGCACAGTTCATCTTTG
R:
GAAGAACTTCCGAGGGTCCCT
Band lengths:
242-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)