HsaINT0061421 @ hg38
Intron Retention
Gene
ENSG00000180488 | MIGA1
Description
mitoguardin 1 [Source:HGNC Symbol;Acc:HGNC:24741]
Coordinates
chr1:77866338-77873120:+
Coord C1 exon
chr1:77866338-77866391
Coord A exon
chr1:77866392-77873003
Coord C2 exon
chr1:77873004-77873120
Length
6612 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TCTCCTTTACTTCCCAGCAGATC
3' ss Score
8.77
Exon sequences
Seq C1 exon
GCTGTGGCTTCAAGTTGTTGGTCGGTGCTGAAACAGAAAAGACAACAGATGAAG
Seq A exon
GTAAAATTCGTTATGTCCTGAATTCCTTTGTTAAATCATTTAAGGATTCTGTCAAAGCAGCTTCTGAGTCACTTCTCCGGTGGGAATTGGCAGCTGTAGGAGGGGTAGGAGGGACTGTCCCTCAGGCTAGATGAGTGACTTACTGGTAGTGGGTTGGCTTCTTTTTTGAAGGCCTTCTTTCTCATCCTTAGTATTGAGGCATGCATGGTATTTCAGCTAACTGGGAGAGGGGTTTCGAGTTGGAAACAGCTCTGATAAGTTTTAGGTTTTTGTTTTTTCTCTTAATGATATTAATTTTTTTTTTTTTTTTTTGAGACAGTCTGTCTCTGTTGTCCAGGCTGGAGTGTGGTGGCGCGATCCTGGCTCACTGCAATCTTTGCTTCCCGGGTTCAAGCGATTCTTCTGCCTCAGCTTCCCAAGTAGCTGGGACCGTAGGTGCCACCACACCCGGCTAATTTTTTTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTTATCCGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTAAGCCACTGCACCTGGCCAGTATTTTTTTACAGTTCTTTAATATAGTGGATTCCCTTCGTTTAATCCAATTAAGAAATAAAGATTTGATTCTAATAGCTGCTTTATTCAGTTTGGAGCCCCTACAAATAAAAAGTCTCAGAGTTTATATCCTGCCTTCACGCCTCACACCCTGTAACCTGTCTTACCTGCTAAGCATTGTTTTCCTCATACACTCCTAGTAGTAAAGGGCAAGGACTCTGGAGTGAGACTACTGGGTTCAAATGCCACATACTAGCTATGTGACCTTAGGCAAGTTGCTTACCCTCTCTATGCCTCAGTTTCCTTATCTCTAAAAATAGAATAGTAATAGTATCTACCTCATAGTGTTTTGTTTTGTTTTAGAGATAGGGTCTTGCTCTGTCATTCAGGCTGGAGTGCCGTGGCATGATCATAGCTCACTGCAGCCTCTATAACTCCTGGGCTAAAGCAATCTTTCTGCCTCATCCTCCCTGAGTTGCTAGGACTACAGGTGCACACCACCATGCCTGGCTGATTTTTTATTTTTGTGTACAGATGAGCTCTTGCTGTGTTGCCCAGGCTGGCCTCAAACTCCTGGCCTCAAGTGATCTTCCAGTCTCGGCCTCCCAAAGTGTTGGGATTACAGGCGTGAGCCACTGTGCCTAGCCCTCATAGGGTTTCTTGAAGATTCAATGTGAAGTGCTTAGAACAGTGCTTGGCATAGTGCATTAAGCAAGTATTGACTGTTACAACATTATTATTTACCCAAGGACCTGTAGTATTTTATCATATCCATATTTTTCAATCTTATAACTTTGAGACAGTATTGCCAGTTGCAGTGATTTTAAAGTATAGTCCTCACAGCATCTTTAGAATGTGCTGGTAGAAATAATTCTGGAGCCCCTGTATTTGAATAATTCTTATTTAAAATGATTCCAGAGACCCATATTTTAAGCAGGTTTCCTTAATGATGATGATGAACTCTAACGTTAGGACTAGGAACAGACTTGTATACATGGGTTTGATTCTCACACTAGCTAGCATGATTACAGTAAGTTACTGACCATCAGCTTACCCTCAGTTTTCCCATTTGCAAAATGGTGTTAATGCCTACTTAATAGGACTGCGGTAAGGATGAAAGCGATGATATCAGCAAGCTTAATTTAAACATTAAACATTTAAAGAGTTTAGTAAGTGGTAGTTATAATAATAATGATATATTATTAACATGTCTAACTTTATTTTTCTACTTCTTAGAATAAATATTGTACTTTTTTTTCTTTTTGAGACGGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAATGGCATGATCTCAGCTCACTACAACCTCTGCCTCCCAGGTTCAAGCGATTCTTCTGCCTCAGCCTTTCAAGTAGCTGGGATTACAGGCGCTTGCCACCATGTCCGGCTAATTTGTATATTTTTGGCAAAGATGGGGTTTCATCATGTTGGCCAGGCTAATCTCAAACTCCCAGCTTCAAGTCATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTTCAGGCCTGAGCCACTGCGCCCAACCTATAACTTTCTATATCCATAGATACCTATATGTCTCACCTCTTAGGAACTATTTCCTATACCTGAAATGCCAAATTCCCTCTGTACTTAAATAAATCTTACCCATCATTGAGCTCAGCTCACATTATTCCTTGCTGAAATTTATCTAGTCTGCTTCAGCCCACACTAAGTTCCCACTTCTCTGAATTCATAATACACTTCAAGTCTGTATGGTATTTAGAACTTTACTATATGTAGAACATACTTTTTGGCCCTCACTAACTAGCTGTGTGTGAATTAGGGCAGTTTATTTAACCCCTCTCCAATATCACTTTTCACATGTTTAAAATGATGTTAACATGACATACTTTTGAAGGAATGTTATAGTAAATTAAATAGAAACTAGCACATTTTCTTTTTTTTTTTAATTTATTTATTTTTTTTTTTTATTGATCATTCTTGGGTGTTTCTCGCAGAGGGGGATTTGGCAGGGTCATAGGACAATAGTGGAGGGAAGGGAGGGAAGGTCAGTAGATAAACAAGTGAACAAAGGTCTCTGGTTTTCCTAGGCAGAGGACCCTGCAGCCTTCCGCAGTGTTTGTGTCCCTGGGTACTTAAGATTAGGGAGTGGTGATGACTCTTAACGAGCATGCTGCCTTCAAGCATCTGTTTAACAAAGCACATCTTGCACCGCCCTTAATCCATTTAACCCTGAGTGGACACAGCACATGTTTCAGAGAGCACAGGGTTGGGGATAAGGTCACAGATCAACAGGATCCCAAGGCAGAAGAATTTTTCTTAGTACAGAACAAAATGAAAAGTCTCCCATGTCTACTTCTATCCACACAGACCCGGCAACCATCCGATTTCTCAATTTTTTCCCCACTCTTCCTGCCTTTCTATTCCACAAAACCGCCATTGTCATCATGGCCCATCCCCAATGAGCCGCTGGGCACACCTCCCAGACGGGGTCGTGGCCGGGCAGAGGGGCTCCTCACTTCCCAGTAGGGGCGGCCGGGCAGAAGCGCCCCTCACCTCCCGGATGGGGCGGCTGGCCGGGCGGGGGGCTGACCCCCCCACCACCCTCCCGGACGAGGCGGCTGGCCAGGCAGAGGGGTCCTCACTTCCCAGTAGGGGCGGCCGGGCAGAGGCGCCCCTCACCTCCCGGACGGGGCGGCCGGCTGGGCGGGGGGCTGACCCCCCCACCTCCCTCCCGGACAGGGCGGCTGGCCGACCCCCCCCCCGCCTGCCTCCCGGACGGGGCGGCTGGCCGGGCAGAGGGGCTCCTCACTTCCCAGTAGGGGCGGCCGGGCAGAGGCGCCCCTCACCTCCCGGACGGGGCGGCTGGCCAGGCGGGGGGCTGATCCCCCCACCTCCCTCCCGGACGGGGCGGCTGGCCGGGCGGGGGGCTGACCCCGCCCACCTCCCTCCCGGACGGGGCGGCTGGCCGGGCGGGGGGCTGACCCCCCCACCTCCCTCCCGGATGGGGCGACTGGCCGGGCAGAGGGGCTCCTCACTTCCCAGTAGGGGCGGCCGGGCAGAGGCGCCCCTCACCTCCCGGACTGGGCGGCTGGCCGGGCGGGGGGCTGACCCCCCCACCTCCCTCCTGGACGGGGCGACTGGCCGGGCAGAGGGGCTCCTCACTTCCCAGTAGGGGCGGCCGGGCAGAGGAGCCCCTCACCTCCCGGACGGGGCGGCTGGCCGGGCGGGGGGCTGACCCCCCCCCCCACCTCCCTCCCGGTCGGGGTGGCTGCCGGGCGGAGACGCTCCTCACTTCCCAGACGGGGTGGCTGCCGGACGGAGGGGCTCCTCACTTCTCAGACGGGGCGGTTGCCAGGCAGAGGGTTTCCTCACTTCTCAGACGGGGCGGCCGGGCAGAGACGCTCCTCACCTCCCAGACAGGGTTGCGGCCCAGCAGAGGCGCTCCTCACATCCCAGACAGGGCGGCGGGGCAGAGGTGCTCCCCACATCTCAGACGATGGGCGGCCGGGCAGAGACGCTCCTCACTTCCTAGATGGGATGGCGGCGGGGAAGAGGCGCTCCTCGCTTCCTAGATGGGATGGCGGCCGGGCAGAGACGCTCCTCACTTTCCAGACTGGGCAGCCAGGCAGAGAGGCTCCTCATATCCTAGACGATGGGGGGCCAGGCAGAGACGCTCCTCACTTCCCAGACGGGGTGGCGGCTGGGCAGAGGCTGCAATCTCGGCACTTTGGGGGGCCAAGGCAGGCGGCTGGGAGGTGGAGGTTGTAGCGAGCCGAGATCACGCCACTGCACTCCAGCCTGGGCACCATTGAGCACTGAGTGAACGAGACTCCGTCTGCAATCCCGGCACCTCGGGAGGCCGAGGCCGGCGGATCACTCGCGGTTAGGAGCTGGAGACCAGCCCGGCCAACACAGCAAAACCCCGTCTCCACCAAAAAAAAAAACGAAAACCAGTCAGGCGTGGCGGTGCGCGCCTGCAGTCGCAGGCACTCGGCAGGCTGAGGCAGGAGAATCAGGCAGGGAGGTTGCAGTGAGCCGAGATGGCAGCAGTACCGTCCAGCTTTGGCTCGGCATCAGAGGGAGACCGTGGAAGGAGACCGTGGGAAGGGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGAGGGAGAGGGAGAGGGCAGCACATTTTCTAGAATATAATGGGTACTCATTAAATGGTAACTGCTGCTATCTTATATTTTAAAAATGAGGTTTAGGCCCGGCACAGTGGCTCTTGCATGTAATCCTAGCACTTTGGGAGGCCAAAGAGGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGCGAAACCCCGTCTCTACTAAAAACTCAAAAATTAGCTGGGCATGGTGGTGCACGCTTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCCAAGATGGTGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAGAAAAAAAAAAAGAAAAGAAAATGAGGTTTAGAAGATTGTCTTGGAGACTGTAAAATAGAAAATAACCCCCGCCCCCCAGGAGACAGAATCTTAAGGTGTAGTTTTCTGTAGTCAGTGCTGTATAACAAATCCCACAGTGTGTTATTTAACAAGGGAAATTCAAAAAGTTATAAATATAGAGTTTCCTAAAACACAGCTATATTGACTAATACTTCACAGGAAGAGGCAATTACACAATTAAATGCTTAAATAATATAGGGTTCCTTAATTAAAAGTTAGGATTCTAGTAAGAGTAATTTAGCTTAATCATTTTACTAGTTTTTTTTTGGTCAGTTAATATAATTAAGTGATTGAGTTGGGCTTTTAAATAGCTAAAACTTTGATAGTCTTAATAATCCCATAAAACTTATACAACTAAGGAACACTGTAGCATTCTTGTTGTTGCTTCGTTGCAAAGCTAATATGATTGCCCTTTTTTTTTTGAGACAGAGTCTTACTTTGTCACCCAGGCTGGAGTACAGTGGCATTATCTTGGCTCACTGCACCATCCAATTCCTGGGCTCAAATGATCCTCCCACCTCAGTCTCCTGAGTAGCTAGGACTATAGGTACACACCACCATGCCTGGCTAACTTTTGTATTTTTTGTAGAGACAAGGTTTCACCATGTTGCCCAGGCTGGTCTCGAACTCCTAAGGGTCAAGTGATCCACCTGCCTTGGCCTCCCAAAAGTGTTGGGATTATAGGCATGAGCCACCATGCCTGGCTGGATTGCTTTTTTATGAAGCATTTTTATGAGGTAAAAACAACTTTTAAGGGCGGGGTGTGGCAGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAAAGTAGGGAGGATTGCTTGAGCCCAGGAGTTCAAGACCAGCCTGAGCAACATAGTGAGACCTGTTTCTACTAAAAATAGAAAAAATTAGCCAGGAGGGGTGGCGTGCACGTGTGGTTCCAGCTACCTGGAATTTTGAGGTGGGAGGATCACTCAAGCTTGGGAAGTTGAGGCTGCAGTGAGCCATGACTGCACCAGTGCACTTCACCCTGGGCTACAGAGTGAGACCCTGTCTCAAAAAAACAAACAACAAATACAGAAATGTGTCTCAGCACATATGAAACTGTTGGCTAGGATATGAAATCTACATAAAACATTCTATGACTCTAAAGGTTACTTGTAACCTTATTAACTTTCTTAATAGCATGGCTCATGACTGACTCTTGGTTTGCCCTCAAAAAGAGCTAGTCATGAGCCCTGCACTATAGTGCCTGCCTGTAGTCCCCACTGCTTAGGATGCTAAAGCCGGGGGATTGCTTGAGGCCAGGAGTTTGAGGTGTTGCTAGACTCTGGTTCTAAAAAACAAATTTTCTTAAACTCCCACTGGTCATATAATGAATAGCAACTTCAGTTTCTGTACTAGAGAAAGCAAGTAACAAGAAGGTAGAAGTAACTTGATTCTCCTTTACTTCCCAGCAG
Seq C2 exon
ATCCCAGATGGATTTTTTGCCCATTTTTATGCCATTTGTGAACACATCAGTCCTGTCCTAGCCTGGGGCTTTTTGGGTCCTAGAAATTCTCTGTATGATTTATGTTGCTTTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180488:ENST00000370791:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(3.1=100)
A:
NA
C2:
PF102654=DUF2217=FE(7.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development