RnoINT0092510 @ rn6
Intron Retention
Gene
ENSRNOG00000056332 | Miga1
Description
mitoguardin 1 [Source:RGD Symbol;Acc:1559958]
Coordinates
chr2:257495548-257500432:-
Coord C1 exon
chr2:257500379-257500432
Coord A exon
chr2:257495665-257500378
Coord C2 exon
chr2:257495548-257495664
Length
4714 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
3' ss Seq
TGCCTTTTGTTTCCCAGCAGATC
3' ss Score
10.19
Exon sequences
Seq C1 exon
GCTGTGGCTTCAAGTTGTTGGTCAGTGCTGAAACAGAAAAGGCAACAGATGAAG
Seq A exon
GTTAGACTCATTATGCCCCAGACTCCTCCTCAGTTCATTCTCTGTGGCTTTAAAACCAGCTAAGACTGGGTAATTTATAAGGAAAAAGGCTGGTTCAGTCCACATAGAGAAAACTGTGACCCAAAGCCTACAGAGTCTAAGAAGGCTGTGTGTGTGGAGGGTGGCAGCCTTGCTTTCCAGCACTGCGTCCTCACAGGCCAGAGTGACTGCCTGCTCGGGCAGGAAGGGCCCTGGGAAACCCACGGGGCTTCTATTCTATGATGGACATGGCTTCCCAGGTGTGGGCTCAGACATGAGAATGCACCAGGGGAATGCCGCTTACTAACTGTCACCTTGGGAGTTGCTCAACCTTCCCATGCCTTAATGTTTTCACCTTTGAGAAAGGTGATGACAGTGTTTACTTTATACAGTTTTTAAAGATTTAGTATAAAGTGCTAAGGTCTCAAATGTAACTCAGTGGTCAGTTCAATTCCAGCTACAAAAAGCTTTAAACAGCCAGCACAGTATGTGCAATGGGAAGTGGTTAGCATAGCATACTGTGCATCTACTGACTTATGTTATCTGACCTGAGTTGTTTTCCATACCCATATTTGTTGGTCTAACATTTGAGACACTGAGCCTGTAAGGCCAACCCTAGGTGTTTCTGCAGCGTAGTTCTTCCAGCACCTTCCATAGGTGCTGTTAGAGAGAACTCTAGGAATTCTATTTCAATAATTCTGGTTTAAAATTATTCCAGAAACCATACTATATTTGTCTTTCCCTCTCTGCGTCTTTCTGTCTTTGCTCTTTCTCTCCCTAGGAGTAGGTATGCGTTTGTGCGTATGAAGAAATGAGTGTGTAGATGACTGAGTGCATGTGTGCTTCTTCATGTAGTGGTTGGGGACACCACCGTAGGCAACATTAGAAGACAACATTTGAGTATCCTTCCACACCTTTGCGTCTTGTTTGAGACAGGGTCTTTTTCTTGCTACGTAAGTCAGGCTAGCTAAAAATTTTCCTGTCCCTTCCTCCCATCTCCCCATAGGAATATGCTGGCATCACAGATACTTGTCCATGTGTTGACTTTTGTGTGGTTCTAAAGATCTACAGTCAGGTTGTCAAGTCTTGCATGACAAACTCTTGACCCATGAGCAAAACAAAACAAAACAAAAAATCCCCCAGCTTTGCCACTGGAATATATCAGGATCAAGGAGGAGAATGTCAAGGCAAGATAGAGGAACTGGACCAAAATAAAGACCAAAATCAACTTACAGGAGGAAGGGTTTCTCTAGCTTACACATTACAGTGTACCATCAAGGAAATTCAAGGCAGGGACTTAGAAGAAGGGACTGAGGCAGACGGTGGACTGTCGTTCACTGGCTTATTGTTCATGGCTTTCTCAGCTTGCTTGCTTATATCATCCAGGACCACCTGCCCAAAGATGCCCCACCCACAGTGGCCTGGGCCTTCTCACAGCCGTCATTAATCAAGAGAAAGCCCCTCAGATTTACCTACAAGCCATCCGATGGAGGCAGTCCTCTTCCCAAAGGACTCCAGCTTGTGTCAGGTTGACAGAGAGCCAACCAGAACATTAAAGAAGAGAAGAATTCTGAGATACTATAAAAGACTAAACTTTTGAAACATGGAAGAAAGAAAAGAAACCCAGGTTAAAGTCACAGAAAATATGTTCAACAAAATCATAGGAGAAAGTTTTCCGAATTTAACCAAGAGATGCCTATCAAGACATAAGAGGCACGCAGTGAACATCAAGTGGATGGGACCAGAAAAGGCACTGCCTGTGTCGAGGAATAGTCACAACACTAAGTGTGCAGGCAAAGAGTGATGCTGAGCTACAAGAAAGAAGAGGCCAAGTCACATCTAAAGGCAGGCCCACCAGAGTAAAAGCTACATCCACTTCTCTAGTGGAGATTTAAGAAGCCACAATGGCTTGAATGGATGTTCTATAAATTCTGAAAGACTACAGATGACATCCAAGGCTACTGTGCTCAAAAACTATCAGTCACACTCAAAGGAAAAAGAAAAAATATATATGGCACAAACAGACTAGAGGAATTTATGACACCAAGCCAGCTCTATGGAGGATACTGGTCTTAGGAATGAACCTACTTAAGAAGATAAACATTTTCAGAACAACTAATCAAGCAAAAGAACATTAAGAAAACATCACAAAAACCCAAAAGGACAGGGACAGGAAGTAATATATACTGTTAAGCAGTAACTCATAATATTAATAGTTGTAATTACCCAATAAAGAGACACAGACTAACAAGTTCGATTAGAAAACATAGTTCCCCCCGCCCCCGTTTTTTTGCTGCTTCCAAAAAAATATGCCTTATCATCTTAGTTCTATTTATATCCTTTTATCCTAAGGTATTGTCTAAGAGACAAAGTATCTATTCTAATGTCTGATAAAATTGACTTTAAACCATAGCTATCAGATAAGGACACATCACACTAAAAAGAGTCTTCCAGGAGGCACTACACTTGTAAGGAACTGTTTGGACTGAAGAGATGGCTCAGCAGCTAAGGGTACAACCGTTCCTCCAGAGAACCCAGGTTCAGTTCATAGTACCAAGTCAGAGAGCTCACAACCATCTGTAACCAATTGTAGGTGATCAGAAGCCCTCTGGCCTCTGAGATCACATATATGTATCTGCGCAGAGATATACACATATACATTTGTTTAAAATAAATCATTAAAAATAAATACTTTTTGATATGAAAACCATAGATTTGCCTCAACACTATGATGGTGAATGACTTAGATTCACCAGTCTCACCAGTAGACAGGTTGTCCAGACAAAAGCTAAACAGAGTACACTGGGGTGAAATTACATCATCCAAATGGTCATAACAGACACCTAGACATTAAAGAAGACACTTTCTCAATAGCCCTTGGAACTTTCTCCAAAGTGGACAACATAGTAGGACACAAAGCAAGTATCAACAAATGTAGGAAAATTGAAGTAACATTCTATGTTTTGTCTGACTACAGTGGAACAAAACTGAATGCCAAGATCAATAGACAGTACACAAATTCATGGAAACTGAACATTGAGCTGTTGAATAGCAAATAGGTCAAGGAAGATAATTGAGAAGGAAAATATTTTTTAACTAAAAAGGTCTTTATATTATTTGAGTGTTTTGCCTCTGTATGTGTCTGGGCACTAGTGTGTGCTTGGTGCCCACAGAAGAGGCATCAGGTCTCTGAAACTGGAGTTAGAGATGGTCATGAACTGCCATTTGGGTGCTAAGAATTGGACTCAGACCCCCCTGCAAAACCAACCAGTGCTCTTAACTGCTGAGCCATCTCTCCAGACTGAGAAGGAAAATCTTAAGTTCCTAGAATTGAATAAAAATGAAAATACAATATATCAGAAATCTAAGTAGCACTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGCATAATCTTAGTAATTACTTAATGATGTATCTAAAGGCTTCTGAAAAATAGGGCAGACAATGCCCAATATCACTAGATGGGGAAAGATGATCAAAATAAAATAGAAATAAAACCAACTCAGAAGTTGTCTTTTAACTATCAAACCTTTAGACTAATTAACCAAAAGAAAGGTAAGACCCAAATGAATAAAAATTAGAGATCAAAAGGGAAACAAATACTACAGTAGTTACTGAGGCAATTCAGAGACTCCTAAGAATGCAGCTTCAAAATCTATAATCTACTAAACTAGAAACTCAGTTACCTTAGAGATTTTCTCCAAATACAAATATATGTGCCAGTATTTCATAAGAAGAGTCAGTCACATGACGAAGTTTAATAACACTTTCTTAACTAGCGGCTGGAATTCTAGTAAGAATAAGTCAATGCTTTATTTATGTGTTTCCGAGTTTGTTTATAGGCAGGCTCTCCTATCACAGGCTGGCCTGGGACTTCTGTGTTACCAGAAATGACCTTGCAACCCTAATCCTGCTGCTTCTCCTGCCCATGTGCTAAAACCATCCCCCATGCCTGGTGCATAGCAGGCCGGGTGTCAAGCCCAGGGTGCTGCGTGTGGTAGGTGAGCAGACGGCCTCTGCGTTCCATCTCAAGTCTTAGTGTCTAGTCACTTAGTGCATAAGCCTTCAAAACCCATCTGAGAGGGGTCTTGGGTCACTACAGATAAGTGAAACTATGAAATCATGAAAACTAACAAAATGTCCCTGAAACGCACACAGAATACTGTATCGTTGTTAGAACTTGGTACAACATGTGAATTGCTTTTAGGAAGTAGAAATTAAGTGCAAAACCCAAGCTGTTCTGTGGTGGTTTGACTGAGGATGGCACCTGTAGGCTCATATATTTGCATGCTCAGTCCCCAGCTGATGAACTGTTTGGGAAGGATTAGGAGATGTGGCTTGTTGGAGCACATTGCCCTTGTTGGAAGAGGTATTCCAGAGTTTTAAAAAAATCTGAATTTTTCTGGCTGGAGCTCTTGGATAAGGAAGGCATAACTCATATTTTATGAGGTAAATTTGCTTCTCATCTGAAACTGCTGGCTGGAGTATGGAAGCTATATAAAGCCCTCTGACTCTCAAGTTTGTTAATGTTCCCAGTAGGCTGTGTCATGATGGGGCCTTGGCCTGCCAGAGGCTTCTGACCTCATAATAGCCAGCAGTTTGTGTTCCTTACTAGAGAAAGTAAATTTAAGGAGATACAAATAAACTGACTGCCTTTTGTTTCCCAGCAG
Seq C2 exon
ATCTCAGATGGATTCTTCGCCCATTTTTACGCCATTTGTGAGCATATAAGCCCTGTCTTAGCCTGGGGCTTCTTGGGTCCTAGAAATTCTCTCTATGACTTATGTTGCTTCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056332:ENSRNOT00000089370:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(3.1=100)
A:
NA
C2:
PF102654=DUF2217=FE(18.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]