HsaINT0063210 @ hg38
Intron Retention
Gene
ENSG00000104870 | FCGRT
Description
Fc fragment of IgG receptor and transporter [Source:HGNC Symbol;Acc:HGNC:3621]
Coordinates
chr19:49513882-49514486:+
Coord C1 exon
chr19:49513882-49514133
Coord A exon
chr19:49514134-49514210
Coord C2 exon
chr19:49514211-49514486
Length
77 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CCTGTGTTTGGGCGCCCCAGGTC
3' ss Score
6.22
Exon sequences
Seq C1 exon
AAAGCCACCTCTCCCTCCTGTACCACCTTACCGCGGTGTCCTCGCCTGCCCCGGGGACTCCTGCCTTCTGGGTGTCCGGCTGGCTGGGCCCGCAGCAGTACCTGAGCTACAATAGCCTGCGGGGCGAGGCGGAGCCCTGTGGAGCTTGGGTCTGGGAAAACCAGGTGTCCTGGTATTGGGAGAAAGAGACCACAGATCTGAGGATCAAGGAGAAGCTCTTTCTGGAAGCTTTCAAAGCTTTGGGGGGAAAAG
Seq A exon
GTGAGATTCCGGTCTGGAGGGGCAAGGGGCCGGGTCCATGCTCCGGGGCCCCGCTTACCTGTGTTTGGGCGCCCCAG
Seq C2 exon
GTCCCTACACTCTGCAGGGCCTGCTGGGCTGTGAACTGGGCCCTGACAACACCTCGGTGCCCACCGCCAAGTTCGCCCTGAACGGCGAGGAGTTCATGAATTTCGACCTCAAGCAGGGCACCTGGGGTGGGGACTGGCCCGAGGCCCTGGCTATCAGTCAGCGGTGGCAGCAGCAGGACAAGGCGGCCAACAAGGAGCTCACCTTCCTGCTATTCTCCTGCCCGCACCGCCTGCGGGAGCACCTGGAGAGGGGCCGCGGAAACCTGGAGTGGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000104870:ENST00000221466:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.024
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(48.3=97.6)
A:
NA
C2:
PF0012913=MHC_I=PD(51.2=94.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTTGGGTCTGGGAAAACC
R:
GCACCGAGGTGTTGTCAGG
Band lengths:
171-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development