RnoINT0060214 @ rn6
Intron Retention
Gene
ENSRNOG00000020583 | Fcgrt
Description
Fc fragment of IgG receptor and transporter [Source:RGD Symbol;Acc:61811]
Coordinates
chr1:101094234-101094978:-
Coord C1 exon
chr1:101094721-101094978
Coord A exon
chr1:101094510-101094720
Coord C2 exon
chr1:101094234-101094509
Length
211 bp
Sequences
Splice sites
5' ss Seq
ATGGTCAGA
5' ss Score
3.59
3' ss Seq
GCCTGCGTGTTGGCATCTAGGGA
3' ss Score
6.83
Exon sequences
Seq C1 exon
AGCCCCGTCTCCCACTGATGTATCATCTTGCAGCTGTGTCTGACTTATCAACGGGGCTTCCCTCTTTCTGGGCCACGGGCTGGCTGGGTGCTCAGCAATATCTGACCTACAACAACCTGCGGCAGGAGGCTGACCCCTGTGGGGCCTGGATATGGGAAAACCAGGTGTCTTGGTATTGGGAGAAGGAGACCACGGATCTGAAAAGCAAAGAACAGCTCTTCTTGGAGGCCATCAGGACCCTGGAGAACCAAATAAATG
Seq A exon
GTCAGAAAGGAGGGTGGGCCGTAGTAGCCTGGGCTTGAGGAAGGACGCCTGGGTCATAAAAGGAGGCTGGAGTCCTGGGTCTGAAGTGGGAGGATAAAGACCCCCAGGAATAAGGGGGAAGGTTGGGTCTGAACCTTGAGGTCTGAGGGAGGAGAGGAAAGGAAGGCTGGCCCTTGCTCCTGAGTCTGCTTGCCTGCGTGTTGGCATCTAG
Seq C2 exon
GGACCTTCACACTGCAGGGCCTGCTGGGCTGTGAACTGGCCCCTGATAATTCTTCATTGCCCACGGCTGTGTTTGCCCTCAATGGTGAGGAGTTCATGCGGTTCAACCCAAGAACGGGCAACTGGAGTGGGGAGTGGCCGGAGACAGATATCGTTGGTAATCTGTGGATGAAGCAACCTGAGGCGGCCAGGAAGGAGAGCGAGTTCCTGCTAACTTCTTGTCCTGAGCGGCTGCTAGGCCACCTGGAGAGGGGCCGTCAGAACCTGGAGTGGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020583:ENSRNOT00000027944:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.086
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(48.9=97.7)
A:
NA
C2:
PF0012913=MHC_I=PD(50.6=94.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACCTACAACAACCTGCGG
R:
ATATCTGTCTCCGGCCACTCC
Band lengths:
308-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]