HsaINT0063322 @ hg38
Intron Retention
Gene
ENSG00000160339 | FCN2
Description
ficolin 2 [Source:HGNC Symbol;Acc:HGNC:3624]
Coordinates
chr9:134885768-134886564:+
Coord C1 exon
chr9:134885768-134885897
Coord A exon
chr9:134885898-134886429
Coord C2 exon
chr9:134886430-134886564
Length
532 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGG
5' ss Score
5.76
3' ss Seq
CTGAAACCTTTCTCTAACAGGAA
3' ss Score
9.28
Exon sequences
Seq C1 exon
GTTTTCCAGCGGAGGGTGGATGGCTCTGTGGACTTCTACCGGGACTGGGCCACGTACAAGCAGGGCTTCGGCAGTCGGCTGGGGGAGTTCTGGCTGGGGAATGACAACATCCACGCCCTGACCGCCCAGG
Seq A exon
GTAGGGCCGCTGCTGGGGCTTGGGGGTCGGGGGCCCTGAATGGGGGTGCCCCTGCCTCTTGGGCCTGGGCTGCCTGGAACACAAGAGCCTCTTGGCCCACAGGGGATTGGGCCCTGAGCACACTCAGGGTGGCACTGGGACCTCCGAGGGCTTCGTCCCTGCTGCAGGCTCTGGCAGCATCGGGACGGGAGAGGGTCAGAGCTCTGGGATGAAGGCCTCTTCAGGTCTTGGCCCCACTGGCATCTCAGGTCCTGAGAGGGGAAGGAGGGACACAGTGGCCCCATAGTGGAGTTTGGGCCCAACCCCAACTCTGCCTCTAATCCGCTAGGATTTGGGAGTCAAGAGTCTTGCCCTGCTGCTCAGCACACCCTGCCGGGTCAGAGCTACACAGGCCCCGGGGATGCTGCGGTGCTCTCCGCCCTCTGCCTCCATGGAGTCCAGACCTCCTTCCAGGCCCTGCCCCAGATCCCCAGCTCCCATGTCTAAAGGTAGAGAGCCCTTCCGCTGAGACCCTGAAACCTTTCTCTAACAG
Seq C2 exon
GAACCAGCGAGCTCCGTGTAGACCTGGTGGACTTTGAGGACAACTACCAGTTTGCTAAGTACAGATCATTCAAGGTGGCCGACGAGGCGGAGAAGTACAATCTGGTCCTGGGGGCCTTCGTGGAGGGCAGTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160339:ENST00000291744:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(20.2=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(21.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTCCAGCGGAGGGTG
R:
GCACTGCCCTCCACGAAG
Band lengths:
263-795
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development