HsaINT0064378 @ hg19
Intron Retention
Gene
ENSG00000105701 | FKBP8
Description
FK506 binding protein 8, 38kDa [Source:HGNC Symbol;Acc:3724]
Coordinates
chr19:18652489-18654383:-
Coord C1 exon
chr19:18654296-18654383
Coord A exon
chr19:18652806-18654295
Coord C2 exon
chr19:18652489-18652805
Length
1490 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
3' ss Seq
TCTCTGCCCCCCACTTCCAGGGC
3' ss Score
11.49
Exon sequences
Seq C1 exon
GGCCGAACCTGGTTCCCGAGGCGCGGCGGCCGCGGCTGGGGGCGGGGAGGGGGGCGCAGGACCCCAAGTGGGGGTCCCGGAGCCAGAG
Seq A exon
GCAAGTGTCCTGGGGTGCTGGGGGCGCCGTGCCGGCCGGGCCGCTGCCCTGGCCTAGGCTGGTCCGGGGGCTAGCGCGCCGGGGGCTGCGGCCGATGGGCGGGGCGAGGGGCCGCGGGGGTGGCGAGCCGGGGGGGCACGGGGGTCGGGGGTGCCCGAGGGGGCGCGGCCGGGCGGGGGTGGCCAGGGATGGGGGTCACTGGGGGCAAAGGGGATCCAGTGGGGGGGTCCCGATGGAGGCGTGCAGGGCCAGGGGCGCCCGAGGCGTGCGGGGGTCGGGTGCCCCAGACTGGTGGCGTCAGACAGGCGTGGGTCGTTGGGGGCCTGGGTCGCGGCTTGACTGAGGGCCCGGCCGGGGCTGTGGGGCGTCAGGAGAGCGTGGGGTGTTATGGGATCGGAAAGGGGGGGGCGTCTGGGGACACTGGAGTGTTTACGGCGAGACGGAGCGGCTGTGGGGGGAGCTGGCCCGTGCTGGGGGCGGTGGTGGTTGGGGTGGGGGGTGGGAGGGGAGGCCGAATTGTGCGGGCGCGGGGAATTATGGGGGTGGGGGCTGGGAGGGTCTCTCAAAGTGGGGCTCCGAGCCCGGGAGGAGCAGGCAGGTGAGGGTTAGGGAGGGGATGCGGCGGGCTGGTTTGATGGCTGTGCCACACTCTTCTGAGCTTGGGGCCTGGGGGACGGAGGGGTTGGTTATTGGTTCAGGAGGTCTGGGGCAAGGAAGAGGCTGTAGAATGTGGTGGGACCTCGACCACTCCTGGAAAGGAGGCTGCTTTGAGGGGGTGGGACCGAGGCCTGATGAGAGGAGGATGGTCTCCTGGGGAAGGATTTGGGCCAGGGTCCCTGATGTTGGGGTTGTGGGGGATAGTGTTAGATTCAGAGTGTGGAAGGAAAAAACGCTTGGGGTTTCTGGGTGATTACAGTTGGTGCTTTTGGGGAGGGTCTCCCCTTTGGAGAAGAGGCTGGAGGTGGGAGGCCCTGGTAAAAGATTCAATTTCCCCCAGTGGCCTTAGAGGCTCTAAAAATGGCTTCCCTAAGGCCTCGGAGGCTGTCCTCTCCACAAAAATCCCAGCACCCTTCGCTCAGCTTATAATCAGGCAAAGCCACAGGGCCTGAAGCCCCAGGTTCAAATCCTCCTTTGGCCTTTGGCTTTCTCTGTGACCTTGGGCAAATGCCTTTGCCCCTCTGGCCTGTTTCCTGTTCTGCAAAATGTTGAGGGGAATCTTCCCTACTTCCTGGAGTATTTGTAAACATTAAATAATAATTAGCTCTAATAATGGCTAACACTATTTGAGCCTGATGCCAAGGGCTTGATGCATGGGTTAATTTCTCCCAACAAGCTGGGGTTGTTGTTACACCCACTGTATAGATGAGGAAACTGAGGCCTGGAGCCCTTGAGTTACACAGAAAGTGATCGGCAGTGTGGGGAATCAGTACAGTGGAGACTTTGAGGGGCTGTGTAGGATTCTGACCCACATCTCTGCCCCCCACTTCCAG
Seq C2 exon
GGCCAATTCCTGTCCCCCCAGCAGCATGGCATCGTGTGCTGAACCCTCTGAGCCCTCTGCCCCACTGCCCGCCGGGGTCCCACCGCTCGAGGACTTCGAGGTACTGGATGGGGTTGAGGATGCAGAGGGTGAGGAGGAAGAGGAGGAGGAAGAGGAGGAAGAGGATGACCTGAGTGAGCTGCCACCGCTGGAGGACATGGGACAACCCCCGGCGGAGGAGGCTGAGCAGCCTGGGGCCCTGGCCCGAGAGTTCCTTGCTGCCATGGAGCCCGAGCCCGCCCCAGCCCCGGCCCCAGAAGAGTGGCTGGACATTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105701-FKBP8:NM_012181:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.980
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAACCTGGTTCCCGAGG
R:
CCATGGCAGCAAGGAACTCTC
Band lengths:
352-1842
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)