Special

MmuINT0064690 @ mm10

Intron Retention

Gene
Description
FK506 binding protein 8 [Source:MGI Symbol;Acc:MGI:1341070]
Coordinates
chr8:70527724-70529675:+
Coord C1 exon
chr8:70527724-70527836
Coord A exon
chr8:70527837-70529390
Coord C2 exon
chr8:70529391-70529675
Length
1554 bp
Sequences
Splice sites
5' ss Seq
CAGGCACGT
5' ss Score
2.9
3' ss Seq
ACACTTGCCTGTCCCCTTAGGGC
3' ss Score
10.86
Exon sequences
Seq C1 exon
AATGGGTGCGCGGGGGCGGGGCTGCGTATCTGAAGCTGTTTCCCGAGGCGCGGCGGCCGCGGCTGGGGGCGGGGAGGGGGCACAGGACCCCGAGCGGGGTCCCCGAGCCGCAG
Seq A exon
GCACGTGTGACGGGGCGTAGCGAGGAGGCCGAGGCTCCCGGGGCCAAGGCCTCCCGAGGCTGCGGGAGGCTGGGCCTCCCGGGGCGGTAGTGTCGACCGGGCGCGGGGCGGCGTTGGGGTGCGGGGCGCGCGGGGCATTGTGGGGGCTCGGGGCGGGAGGGTCTCCGGTCGGGGCCGGATCCCGGAAGGAGCCCCGCAGGTGAGGGTCGCAGGGCAGGGACGCAGGGCTCCGGGGCTTCCTGGGGCTTAAGGAGAGGGCCTGATAGGACGTAGGGTTCTACAGCTGGGTTGGGGGCCTCCGCAGAGAGGCCTGGGGCCAGCGAGATGGTGCAAGAGTCCATATTGGTGTTCCCACTACTCTTTCGCTTTTATTTAATTTGAGACTGGGTCTCCAGTATTCTAAGCTAGTCTTCAAGTGGGTGTGTAGCTCAGGCTGGCCTTGAACTCCTGGCCTTCCTGTCCGAAGAGCTGGATGACAGGCGTGCCTTGCCACACCTGGTTTACAGGGGTGCTAATTCTAAAGCGTCGTGCTTGCTAGGAGAACGCTCTTCCAACGAATTACAATCCTAGCTTATGCTTTCAATTTCTTGAGTCAGGATTTCATGTAACTCATGAATTCCATGGCCTCGAATACCTGGTCATCCTTCCTCCACCTCCCGATTGCTGGAATGAAAGGCATTTGCTGATACATGGTTTCTGCAGCGTTGGGGTTAGAACCCCGGGTCTTGTGCTTGGTAGACAAGTGCCCTGTTGCCTGAGCTATCTCCCCAGTGCCCTACTACGATTAAAAGCTGGAAGCAGACTTGGTGATAGAGGCAGGTTGGAGCCATCGTCTCTGTTGTTGGGAGATTCAGCAAGAGACATTAAGTTTCTAGCACCAATCCTTTATTGCTGGATCCTTTAGCAGAGAAGGTGGCCAGAGTCAGGAACCTCTACTAAAAGTTCACCTTTTTCAAATGAATAAGTTATAAAACTTATAAAGATTGCTGTCCCAAGGCCTCAGTGACAGTCCCCACTGCCTCAATTACCCCAACACCCTTTTCTTGACATTCAGCTCAATAACTTTCGATCTTGACCCTCTTGTTAATTGGCTTGTTTTCTGACTTTGGCTAAGTGGCTTTGTCTTTTTTTTTTTTTTTTTTTTGGTGGTTTATCGAGACAGGGTTTCTCTGTATAGTCCTGGCTGTCCTGGAACTCACTTTGTAGACCTTGAACTCAGAAATCCACCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGCGTGTGCCACCATGCCTGGCTGGGCTTTGTCTTTCTGTGCTTGTTGGATCTTTCCTGTGTAAGCTAGGGTTTCCCTACTTTCTGTGCTTATAAAGATTCCATAATAACAGCTAACCCAGCTGCAGTCTGTGGCTCAGCGTGTGAGGTCTGTGTTCCTTTCAACAAGCCAGGTTGGTAGGATGCCCAGCGAATATACGATGAATGAAAGGGAGCTACATGAGGGATGGCAGTTGGAGGGAGTTGGAGGGGCTGCCTAGATGGGGTTATCACTGTCACACTTGCCTGTCCCCTTAG
Seq C2 exon
GGCCAGTTCCTGATCCCAGCAGCATGGCGTCTTGGGCTGAGCCCTCTGAGCCTGCTGCCCTGCGACTTCCTGGGGCCCCACTGCTGGAGGGCTTTGAGGTGCTCGATGGGGTTGATGATGCAGAGGAGGAAGATGACCTAAGTGGGCTGCCACCACTAGAGGACATGGGACAGCCTACAGTGGAGGAGGCTGAGCAGCCTGGAGCCCTGGCTCGGGAGTTCCTGGCAGCCACAGAGCCTGAGCCAGCCCCAGCCCCAGCCCCGGAAGAGTGGCTGGACATTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019428:ENSMUST00000119353:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact

5' UTR

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=NA C2=0.898
Domain overlap (PFAM):

C1:
NA
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTGCGTATCTGAAGCTG
R:
GCTGGCTCAGGCTCTGTG
Band lengths:
342-1896
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types