RnoINT0061238 @ rn6
Intron Retention
Gene
ENSRNOG00000058359 | Fkbp8
Description
FK506 binding protein 8 [Source:RGD Symbol;Acc:1308670]
Coordinates
chr16:20651060-20652889:-
Coord C1 exon
chr16:20652852-20652889
Coord A exon
chr16:20651347-20652851
Coord C2 exon
chr16:20651060-20651346
Length
1505 bp
Sequences
Splice sites
5' ss Seq
CAGCACGAG
5' ss Score
-16.86
3' ss Seq
ATGCTTAACTGTTCCCCTAGGGC
3' ss Score
8.59
Exon sequences
Seq C1 exon
TGGGGGTGGGGAGGGGGGCACAGGACCCCAAGCCGCAG
Seq A exon
CACGAGACGAGCGTGCGGAGGAGGCCGAGGCTCCCGGGGCCGAGGCTCCGAGCTGCGGGGACCGGGGCCCCCAGGTGTAGTGTCGACCGGGCGCGGGGCGGCGTTGGGGTGCGGGGCGCGCGGGGCATTGTGGGGGCTCGGGGTGGGAGGGTCTCCGGTCGGGGCCGGATCCCGGAAGGAGCCCCGCAGGTGAGGGTCGCAGGGCAGGGACGCGGAGCTCCGGGGCTTCCTGGAGCTTAAGGAGAGGGCCTGACAGGATGTACGGTTCTGCAGCTGGGTTGGGGATCCTCCGTAGAGAGGCCTGGGGCCAGCGAGATGGTGCAAGATTCAATATTGGTGTTCCCACTACTCTTTCGTTTTCATTTAATTTTGAGACTGGGTCTCATGTATTCTAACTCAGTCTTCCAAGTGGCTGTGTAGCTCAGGCTGGCCTTGAACTCCAGGCCTTCCTGTCTCAAGCTCCCAAGAGCTGGATGACAGGCGAGCACTGCCACACCAGGTTTTACAAGGGTGCTGATTCTAAAGCGGTGTGCTTGGTAGGAGAACGCTCTTCCAACGAATTACAACCTTAGCTTATGCTTTAAATTTCTGGAGACAGGGTGTCATGTAATTCATGAATTCCATGGCCTTGAATACCTGATCATCCTTCCTCCACCTCCCTATTGCTGGGATGAAAGACATTTGCTGATGCCTGGTTTCTGCAGTGCTGGGAATAGAACCATGGGTTTTGTGCTTGGTAGACAAGTGCCCTATTGCCTGAGCTATGTCCCCAGTGCCCTACTGTGATTAAAAGCTGGAAGCAGGCTTGATAATAGAGGCAGGTTGGAGCCATGGTCCCTGTTGTTGGAAGATTCAGTACCTTCAGGGTACGGAACAAGAGACATTAAGTATCTGGCACCAATTCTTTATTGCTGGAGCCTTTAGCAGATAAGGTAGCCAGAGGCAAGGACCTTTACAAAAATTCACTTTTCTCAAGAGATCCAGAAGTTATAAAAACAGCTGTCCCAGTTTGTGGAAAGGAATTAGTAAAAGTTTAAGAAAAAACAAGCAAACAAACAGCTGTCCCAAGGCCTCAGTGACTGTCCCCACTGCCTCAGTAACTCCAACACCCTTTTCTTGACATTCAGTTCAGTAACTTCTAAATCTTGGCCCTACTGCTAATTGGCTTGATTTCTGACCTTGACCAAGTGGCTTTGTCTTTCTGTGCCTGTTGGGTCTTTTTTGTGTAAGCTATGGTTTTCCTACGTTCTTGTTTATAAAGATTCCATGCTAATTACTTCTAATAACAGCTAAACCAGCTGTAGTTTGTGGCTCAGAGTGTGAGGTCTCTGCACCCTTCTTTCAACAAGCCAGGTTGGTAGGGTGCCCAGTATGTACATGATGAATGCAAGGGCTGGTGTTGCTGATATACTCCAGGGATGCCAGTTGTAGGGAACTGGAGCTTAGGAGAGTTAGAGGGCCTTCCTAGATGGGGTTATCACTGTCATGCTTAACTGTTCCCCTAG
Seq C2 exon
GGCCAGTTCCTGATCCCCCAGCAGCATGGCGTCTTGGGCCGAGCCCTCTGAGCCTGCTGCCCAGCTACTTTGTGGGGCCCCACTCCTGGAGGGCTTTGAGGTGCTTGATGGGGTTGATGATGCAGAGGAGGAAGATGACCTAAGTGGGTTGCCACCACTAGAGGATATGGGACAGCCTACGGTGGAGGAGGCTGAGCAGCCTGGAGCCCTAGCTCGGGAGTTCCTGGCAGCCACAGAGCCTGAGCCAGCCCCAGCCCCCGCCCCGGAAGAGTGGCTGGACATTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058359:ENSRNOT00000077756:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.830
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]