HsaINT1013687 @ hg38
Intron Retention
Gene
ENSG00000105701 | FKBP8
Description
FK506 binding protein 8 [Source:HGNC Symbol;Acc:HGNC:3724]
Coordinates
chr19:18541679-18543577:-
Coord C1 exon
chr19:18543482-18543577
Coord A exon
chr19:18541996-18543481
Coord C2 exon
chr19:18541679-18541995
Length
1486 bp
Sequences
Splice sites
5' ss Seq
CAAGTGTCC
5' ss Score
-5.03
3' ss Seq
TCTCTGCCCCCCACTTCCAGGGC
3' ss Score
11.49
Exon sequences
Seq C1 exon
AAGCGGCCGAACCTGGTTCCCGAGGCGCGGCGGCCGCGGCTGGGGGCGGGGAGGGGGGCGCAGGACCCCAAGTGGGGGTCCCGGAGCCAGAGGCAA
Seq A exon
GTGTCCTGGGGTGCTGGGGGCGCCGTGCCGGCCGGGCCGCTGCCCTGGCCTAGGCTGGTCCGGGGGCTAGCGCGCCGGGGGCTGCGGCCGATGGGCGGGGCGAGGGGCCGCGGGGGTGGCGAGCCGGGGGGGCACGGGGGTCGGGGGTGCCCGAGGGGGCGCGGCCGGGCGGGGGTGGCCAGGGATGGGGGTCACTGGGGGCAAAGGGGATCCAGTGGGGGGGTCCCGATGGAGGCGTGCAGGGCCAGGGGCGCCCGAGGCGTGCGGGGGTCGGGTGCCCCAGACTGGTGGCGTCAGACAGGCGTGGGTCGTTGGGGGCCTGGGTCGCGGCTTGACTGAGGGCCCGGCCGGGGCTGTGGGGCGTCAGGAGAGCGTGGGGTGTTATGGGATCGGAAAGGGGGGGGCGTCTGGGGACACTGGAGTGTTTACGGCGAGACGGAGCGGCTGTGGGGGGAGCTGGCCCGTGCTGGGGGCGGTGGTGGTTGGGGTGGGGGGTGGGAGGGGAGGCCGAATTGTGCGGGCGCGGGGAATTATGGGGGTGGGGGCTGGGAGGGTCTCTCAAAGTGGGGCTCCGAGCCCGGGAGGAGCAGGCAGGTGAGGGTTAGGGAGGGGATGCGGCGGGCTGGTTTGATGGCTGTGCCACACTCTTCTGAGCTTGGGGCCTGGGGGACGGAGGGGTTGGTTATTGGTTCAGGAGGTCTGGGGCAAGGAAGAGGCTGTAGAATGTGGTGGGACCTCGACCACTCCTGGAAAGGAGGCTGCTTTGAGGGGGTGGGACCGAGGCCTGATGAGAGGAGGATGGTCTCCTGGGGAAGGATTTGGGCCAGGGTCCCTGATGTTGGGGTTGTGGGGGATAGTGTTAGATTCAGAGTGTGGAAGGAAAAAACGCTTGGGGTTTCTGGGTGATTACAGTTGGTGCTTTTGGGGAGGGTCTCCCCTTTGGAGAAGAGGCTGGAGGTGGGAGGCCCTGGTAAAAGATTCAATTTCCCCCAGTGGCCTTAGAGGCTCTAAAAATGGCTTCCCTAAGGCCTCGGAGGCTGTCCTCTCCACAAAAATCCCAGCACCCTTCGCTCAGCTTATAATCAGGCAAAGCCACAGGGCCTGAAGCCCCAGGTTCAAATCCTCCTTTGGCCTTTGGCTTTCTCTGTGACCTTGGGCAAATGCCTTTGCCCCTCTGGCCTGTTTCCTGTTCTGCAAAATGTTGAGGGGAATCTTCCCTACTTCCTGGAGTATTTGTAAACATTAAATAATAATTAGCTCTAATAATGGCTAACACTATTTGAGCCTGATGCCAAGGGCTTGATGCATGGGTTAATTTCTCCCAACAAGCTGGGGTTGTTGTTACACCCACTGTATAGATGAGGAAACTGAGGCCTGGAGCCCTTGAGTTACACAGAAAGTGATCGGCAGTGTGGGGAATCAGTACAGTGGAGACTTTGAGGGGCTGTGTAGGATTCTGACCCACATCTCTGCCCCCCACTTCCAG
Seq C2 exon
GGCCAATTCCTGTCCCCCCAGCAGCATGGCATCGTGTGCTGAACCCTCTGAGCCCTCTGCCCCACTGCCCGCCGGGGTCCCACCGCTCGAGGACTTCGAGGTACTGGATGGGGTTGAGGATGCAGAGGGTGAGGAGGAAGAGGAGGAGGAAGAGGAGGAAGAGGATGACCTGAGTGAGCTGCCACCGCTGGAGGACATGGGACAACCCCCGGCGGAGGAGGCTGAGCAGCCTGGGGCCCTGGCCCGAGAGTTCCTTGCTGCCATGGAGCCCGAGCCCGCCCCAGCCCCGGCCCCAGAAGAGTGGCTGGACATTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105701:ENST00000597960:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.983
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAACCTGGTTCCCGAGG
R:
CCATGGCAGCAAGGAACTCTC
Band lengths:
356-1842
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains