HsaINT0066542 @ hg19
Intron Retention
Gene
ENSG00000162613 | FUBP1
Description
far upstream element (FUSE) binding protein 1 [Source:HGNC Symbol;Acc:4004]
Coordinates
chr1:78433311-78433887:-
Coord C1 exon
chr1:78433849-78433887
Coord A exon
chr1:78433351-78433848
Coord C2 exon
chr1:78433311-78433350
Length
498 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
TTTATTTAATTTTTTGATAGCTT
3' ss Score
5.76
Exon sequences
Seq C1 exon
ATCAACCAGATGCTAAGAAAGTTGCTCCTCAAAATGACT
Seq A exon
GTAAGTATTCCTTTTAAACTGGGTCAAAAGCTAAAGTAACAATTTCAATGTTAAGATTTTGTTCATATTATTGGGTATCTTTGAAGTTAGTTGGTTTATGAGTATTTTGGATCAGCTAGCCTGAATTTCTTTGTAAATATATACCTTTTTCTCCTATTTTACAATCTGTCCCATTAATTGTGGCCGGGTATATGTAAAGATTGGTTGCTGAATTATTTTACATATTTAACAACTCCAATTCTTGATCTATACTTGTACAACTTGAAAAAGGAAATTATTTTGTTCTGTGCCATTGCTAATATAATGTCTTCCCTTTCATTGGCTCTCTTGCCCCTGTCAATGCCAATATAAATATTGTGTAAAAAATTTGACTCTCTTCAAGGTGTTGTCTGTGCATTAGGGAGAGATTTTTGAATGTTTGATGTGATTGTGTTGTTAAATATATAAGTAAATTTAAATTTTGAATTTTTGTTTTATTTTTATTTAATTTTTTGATAG
Seq C2 exon
CTTTTGGAACACAGTTACCACCGATGCATCAGCAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162613-FUBP1:NM_003902:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0001324=KH_1=PU(20.6=40.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)