HsaINT0066649 @ hg19
Intron Retention
Gene
ENSG00000176920 | FUT2
Description
fucosyltransferase 2 (secretor status included) [Source:HGNC Symbol;Acc:4013]
Coordinates
chr19:49199228-49209191:+
Coord C1 exon
chr19:49199228-49199346
Coord A exon
chr19:49199347-49206211
Coord C2 exon
chr19:49206212-49209191
Length
6865 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CCGTTTTCCTCCCCTGACAGCCA
3' ss Score
9.6
Exon sequences
Seq C1 exon
AGTCACCGATGCTGGAAGGGTTTCTTTGGCCCTGAGTGAAGAGAGACCCAGAGGGAACACTGAGGTGCCTGCCCAACCACTCTGTCCCGGTTTCCTTCAGCAGGACCAGGTGAGAGAAG
Seq A exon
GTGAGGGGGCTCCTCTCCCACCCTACAACACGCACACCTCTGCACACACGCCCAGGCGGAGAGCAGGGATTTGGGACGTGGACCTGTGTGCCCTCGTGGGTCCCTGGTGCCCTCTGGGAGGCACCCCCAACTCAGGACCTCCAGGAGAGGAGGGTCCCTCCCTCGGCAGCCAGGACCCCCCTCCCCAGCCAGCCGCCCTCCTTAGCTCCCTCCCCACTTCCTTCCAGGTGGATCTGTTTCTAGAGCTCCAACCACCAGCTCCCTCCCCTTCTCCACCCCGGGCCACCAGGTCCTTCCTTGTCTCCTTCCCCTCAGCAGTTTCTATGAACCACCCTGGCAGTAATGGTGCAGATGGCTCGCGCACAGCTGGTGGTGACCCGACTTTCCTGCCTCCACCCTGGGGCTCCTCAGAGGCTTCATGGAACCCAAACTGCTGGTCTCACCTCCGAGCCCTGCCGTCGCCCAGGGAGGGCGGCTCCGTCCCTCCTGCACTCCCTAATCCCGCTCTGAATCACCGCTTCTGTTCTGGGTCGGAGAATAAAGGTGGGGTTTCCAAGTGATGGCCCTACGTTATTGTCTGAAGCTCCCTTCTCCTCCCCAGGGTGGAAGTGATAATGCCGGGAATCCGGGAATCCCGGGGAGGTGCAGGAAGACAGCGAGCTCGAGGCAGTGGGGTGCGACTGAGCCGGATGTGCTGAGCTGCCCGGGGCACGGGGCGGTTGGGGTAGAGAAAGGCTTTCAGAGCTGGGGGACAGGACGGGGCCCCGGGTGAGCGGAGAGCTGGGTTATTTCACGGGAACAGCTGGTGACAAAGCCGGAGGGGTGTGCGGGGCCGGCGAGAGACTGGGATTGTGTCTTAAGAGGCATAGGGAGCCCTGAAGGGGCTGCGAGCTGGGAAGGGGCAGGGCCGGCGCTGGGTGTAGGGGACAGAGGGGAGAGGAGGAAGCCGGGCCGCAATAGAAAGACGTGGACGGGGCTGGACGTGGTGGCTGACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACAGGCGGATCACTTGAGGTCAGGAGTTCGAGACCAGTCTGGCCAACATGGAGAAACCCCGTCTCTACTAAAAATACAAAATTAGCCAGGCGTGGTGGTGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGTTTGAACCCGGGAGGCGGAGGTTGTGGTGAGCCGAGATTGTGCCATTGCACTCCAGCCTGGGGAACAAGAGCAAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAATCTCAGTAAGATAGACCAGGTGTGGTGTCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGAAGGAGAACAGAGGACCTCCTGAGGCCAGGAGTTTGAGATCAGTGTGGGCCACATAGCAAGACCCCCTCCCCACCATCCCTACAAAAAAAGCAATTCAAAAAAAATAATGCCTTCAGGCAGAATGGGAGTGGTGCTTGGTTCAAGCCTGACATAAGTGTGAGTTTGGGGCACAAATTCTGCTCTGAATACCAGGGACAGCCCATGTAATACAGCATTTCCCTTTGTGCCCACGCAGCCCTAAGGGAGGTGTGGTTTGTTGTTGTTGTTGTATCTTTTTGAGATGGATTTTTGCTCTTGTTGCCCAGGCTGGCATGCAATGGTACAATCTCGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGCGATTCTCCTTCCTCAGCCTCCCAAGTAGCTGAGATTACAGTCATGAGCCACCATGCCTGGCTAATTTTTTGTATTTAGTAGAAATGGGGTTTCACCATATTAGTCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCACCCGCCTCAGCCTACCAAAGTGCTGGGATTACAGGCATGAGCCACTGCACTGGCTCTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCACTGTGTTGTGCAGGCTGGAGTGCAATGGTGTGATCTCAGCTCACTGAAACCTCTGGGGAGGTGTTGTTTTTATCCCTCCCCACAACCCCCTGTTGATGGACAGACAAGGACAATGAAACACAGAGAGGTAAAAGCCCTGGGTTAAAGTCACACAGCACATAAAAGGTTCCTGATCATGCCGTGCAGGGCATCTCGCCAAACCTCAAAAATTCACAATCTCATAGCGCAGCTTGCTCTGTGAGGCCTCCCCACCTCTTCCTTCTCTCCTTCCAGGCTCCAGTCAAGGTCAGTGCCCAGCTTCCTGCTCTGGGCCACTCAGCAGCCACCTTCCTCCTTCCTGGGTAAGGAGGTAGGGAGCTACCAAGGAGGCAGGGACATCCGTGTAGAACATTCTGCTTTTCTTTTTTCTTTTTTTTTAAGATAGAGCCTGACTCTGTCGCCCAGGCTGGAGTGCAGCTGTAGTGTAATGGCACAATCGCAGCTCACCACAACCTCCATCTCCCAGGTTCAAGTGGTTCTCCTGCCTCAGCCTCCTGAGTAGCTGTGATTACAGGCATGTGCCACCACGCCTGGCTAATTTTTGTATTTTTAGTAGCGACGGGGTTTCTCCATGTTGGTCAGGCTGCTTTCAAACTCCTGACCTCAGGTGATCCGCCCCCGCTTGGCCTCCCAAAGTGCTGGAATTACAGGCGTGAGCCACTGCGCCTGGCCTAATTTTCTCTAAAATAGAGACAAGTTCTCACTATGTGGTCCAGGCTGATCTCGAACTCCTGAACTCAAGCAATCCTCCCAGCTCAGCCTCCCAAAGTGCTAGCATTACATGTGTGAGCCATCATGCCTGGTCCCTGTCTGTTTCATTCTCCCTGTCTCTCTAGTCCTGCCTCTCTCTGTGTCTTCTGGTCTTTTTCTCTATTTGTCTCTTCCTCTGTCCCTTTTATCATCTCTGTCCCTTCCCTCCCTCCCTCCCTCCCTTCCTTCCTTCCTTCCTTCCATAGGTGAGAAAAAGTAGCATCTTTTCCTCACCTATCACAAAGTTTGCAGCTGGGGCACCTACAGTAAAAGGTTAACAGACACAAGCATAACAAATGTATTTAAGGCAAGTGTTGACATGGGAGCCTTCAGAAATGAAGGCCTAAAGAAACAGGGAAACCTGGGTGGGTTTTTTGTTTTGTTTTGTTTTTAGATGGAGTTTTACTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTTAGCTTACTGACTGCAATCTCTGCCTTCCATGATCAAGTGATTCTCCTGCCTCAACCTCCCCAGTAGCTGGGATTACAGGTGCGCGCCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGAAGGGGTTTCACTATGTTGGCCAGACTGGTCTCGAACTGCTGACCTCAGGTGATCCACCCACTTTGGCTTCTGGAAGTTCTGGCATTACAGGCGTGAGCCACTGTGCCCGGCTACCTCCCGTTCTATGATCTATGGTTTAAACGCTACATTTGACCACTATCAATACTCCCAGTATCAAAACTGGGAAACCTGGGTTCTTCACCCAGAGCCTAAAACGAACAGCATTCTTTGCCTTGTGGGTGACAATAGCAAACATTTACCGCCTGTGTATATGTGCCAGACACTGTTTTAATCCTCAGAGAGGTGATGTCACTTGCCCAAAATCACACAGCTCGTGACTGTGAGTCTGAAATTGGCCAGAGCTTGTGCACCTAGCCACTGGTGGTGATGTGTCTTTGAGTCATCGAGTCCAGCATTCTGTGTTGGACTTAGTGAAAGGATATACTTTTGTAGTGATGAGAAAGGAGCTTTATCTAGAATTTGTGAGGCCAGGCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGTGGATCACTTGAGGTCAGGAGTTTGAGACCAGCCTGGTCAACATGGTAAAACCCCGTCCGACTAAAAATACAAAAATTAGCCAGGTGTGGTGGTGCACACCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAAGAGAATTGCTTGAACCCAGGAGGCGGAGGTTGCAGTAAGCCAAGATGGCGCCACTGCACTCCAGCCTGGGTGACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAGAAAAGGAAAAGAAGTGAACTGGTTCAAAGACCATAATCATACATATCACACAAGACTGCAAGCGGACCAGGGTCAGTTAATTTAGCGGCTCCACAAAGTCATCAGTCACCTGAGCTCCATCCATCTTCACATGCTGTGCTACCATTTATTTTATTTTATTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCTCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACCGCAAGTTGCGCCTCCCAGGTTCATGCCATTCTCCTGCCTCAACCTCCTGAGTAGCTGGGACTATAGGCGCCCACCACCACACCCGGCTAATTTTTTTATATATATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCATGATCCGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCAGCCAGCTACCATTTCTTAGCTGTATCATCTCACGGTCCCAAAAGGGCTGCTACACATCCAGCCATCACATGCAGATAATTTCTTTCAAAAACAGCAGAAAGAGGCTCGTTCTTGTCTTGGTCCCTTTTGAAGAATGAATGAAACCTTCCTAAGCCTTCCAGCAACTCCCCCCACAACTCCGATGGGTAGGAATTGTCACATAACCATGTGGCCCGATAGGAGGCAAAAGAAATGAGACTTCTGGGATTAGTTTAGCCTCAGATTCTGCAGCTGAGAAGTTGATCAGCCACCTCTGAAGGACAAGCAGCTTGCAGAAAATTAGGGTGGTGTTACCAAGGAGAAAAGGGGAAATGGCTTTAGAGTAGACAACAGGGATGCCCTGAGGGGTTGTGTAGGTTGTTCACTGCACGAAGTCCCCTGGTCAAGAAGGTAAGCGGGGTTTAAACAGACCCACAGTCTACTCATCAAACCAGGTGTCCTTGGCATTGTGTCCACCCAGAGAGCTCACTATTTTCTTTTCTTTTCTTTTCTTTTTTTGAAATGGAGTCTTGCTGTGTCCCCCAGGCTGGAGTGCAGTGGCATGATCTTGGCTCACTGCAGCCTCCGCCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACGGGCGTCCGCCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGCCTTGTCATGTTGGCCAGGTTGGTCTCCAGCTCCTGACCTCAGCTAATCTGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCACAACTCATCTTTTAGAGCCAGCCTACACTTGTCATAGGCCATGGCCGATGAATGGGAAGTCCACGGTGGAGCTGGGTGTTCCTCTCAAGTTCAACTGGCTGCGGCCAGGAGGGCAGGCAGGCCAGGTGGACAATTTCCCTTCAAAGTGGATACAGGCAGGACATGCAAAGATGAATATCTCTGGCACTGGACTCTGGCAAGTAGGAAAATAAAAACAAAAGATGAACATCTTGGGCCGGGCGCGGTGGCTCACATCTGTAATCCCAGCACTTTGCGAGGCTGAGGCAGAAAGATCACGAGGTCAGGAGTTCGAGACTAGCCTGACCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAGTTAGCCAGGCGTGGTGGCGGGCGCCTGTAATCCCAGCTACTCAGGAGGCTGAGACAGGAGTATAGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCAGAGATCGTGCCATTGCACTCCAGCCTGGGTGACAGAGATTCCATTTCAAAAAAAAAGAACATCTCTACAAACTGGATCACCAGTAAATAATAGCTACATATACTTGTACTCACCATATGTGGACACCCACATATGTACACTCAGTCGATAAACACCCACATTTAAACATACCATGTGGGCCAGGTGCAGTGGCTCACGCCTATAATCTGAGCACTTTGGGAGGCCAAGGTGGGAAGATCACTTGGGCCTAGGAGTTTGAGACCAGCCTGACCAACATACTGAGACCTTATCTCTACAAAAGAGAATTTGTTTTTAGTTAGCTGGGCGTGGTGATGTGCACCTGTAGTCCCAACTACTCGGGAGGCTAAGGCAGGAGGATTGCTTGAGCCTAGGAGGTCAAGGCTACAGTGAGCCACGTTCTCACCACTGCACTCCAGCCCAGGTGGCAGAGCAAGATCCTGTCTCAAAAAATAAATAAAAAATTAATAAACAAAAAATGCATACAATGTATAGATACACAAAGTGTATATATATACATATATATGTATACACATTCACATATACACACATGCTGTGTTCACAATCACCTAGATGACATATGTATGTGTATACATACTTACACATATACCCTTACATGTACACGATATATCTCTACCCATACACTACCATGTACACATGTCCATTTGTACACAGCTGTATATGTACACACACAATTTTGCACACACCTGTATATGTATACAATGTATGGATCCCCATATCCACATTACACACAATGTGTACGCATCTACCTGTGTACACACACCCACCTATGAACACAATGTAGACACATCTGTATAAACACACTTGAGATACATGCCTGTGCACATAGGCAAGTATGTGCCAAGTATTTACACACCTGAAGTAGAAGCACACACACACCCACACTATGCCTGCACACCACCGCATGGCCACGTTCACCAGCGCCCCGGGCCTCCATCTCCCAGCTAACGTGTCCCGTTTTCCTCCCCTGACAG
Seq C2 exon
CCATGCTGGTCGTTCAGATGCCTTTCTCCTTTCCCATGGCCCACTTCATCCTCTTTGTCTTTACGGTTTCCACTATATTTCACGTTCAGCAGCGGCTAGCGAAGATTCAAGCCATGTGGGAGTTACCGGTGCAGATACCAGTGCTAGCCTCAACATCAAAGGCACTGGGACCCAGCCAGCTCAGGGGGATGTGGACGATCAATGCAATAGGCCGCCTGGGGAACCAGATGGGCGAGTACGCCACACTGTACGCCCTGGCCAAGATGAACGGGCGGCCCGCCTTCATCCCGGCCCAGATGCACAGCACCCTGGCCCCCATCTTCAGAATCACCCTGCCGGTGCTGCACAGCGCCACGGCCAGCAGGATCCCCTGGCAGAACTACCACCTGAACGACTGGATGGAGGAGGAATACCGCCACATCCCGGGGGAGTACGTCCGCTTCACCGGCTACCCCTGCTCCTGGACCTTCTACCACCACCTCCGCCAGGAGATCCTCCAGGAGTTCACCCTGCACGACCACGTGCGGGAGGAGGCCCAGAAGTTCCTGCGGGGCCTGCAGGTGAACGGGAGCCGGCCGGGCACCTTTGTAGGGGTCCATGTTCGCCGAGGGGACTATGTCCATGTCATGCCAAAAGTGTGGAAGGGGGTGGTGGCCGACCGGCGATACCTACAGCAGGCCCTGGACTGGTTCCGAGCTCGCTACAGCTCCCTCATCTTCGTGGTCACCAGTAATGGCATGGCCTGGTGTCGGGAGAACATTGACACCTCCCACGGTGATGTGGTGTTTGCTGGCGATGGCATTGAGGGCTCACCTGCCAAAGATTTTGCTCTACTCACACAGTGTAACCACACCATCATGACCATTGGGACGTTCGGGATCTGGGCCGCATACCTCACGGGCGGAGACACCATCTACCTGGCCAATTACACCCTCCCCGACTCCCCTTTCCTCAAAATCTTTAAGCCAGAGGCAGCCTTCCTGCCGGAGTGGACAGGGATTGCCGCAGACCTGTCCCCCTTACTCAAGCACTAATGCTGGCCCATTCTTTGAGACCTTTTCTCCTTCTCTGCCTCCCTCAAGATGAGTGCCCGGGCATGAGAAGCACATGGTTCCATGAGCAGGACCCATCTCTCTTCTGTGAAGATGCGTTGGGCTGCAAGTAACAGAAATCTCAGTGAACAGTGGCCTGGCGTGGTGGCTCATGCCTGTAATGCTCGCACTTTGTGAGGCCAGGGTGGGTGGATCACTTGAGGTCAGGAGTTCAAGACTAGCCTGGCCAACATGGTGAAACCCCATCTCGACTAAAAATACAAAAATTAGCCAGGCGTGGTGGTGCACACCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAAGAGAATCACTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCCAAGATGGTGCCGCTGCACTCCAGTCTGGGTGACACAGCAAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAAGAAATGAATGGGTTCAAAGACCATAATCATGCATATCACATAAGACCAGAAGTGGCCCAGGTCCAGGGTCAGTTAATTTAGCGGCTCCACAAAGTCATCAGTCACCTGAGCTCCATCCATCTTCACATGCTGTGCTACCATTTCTTAGCTGTATCATCCCATGGTCCCAAAAGGGCTGCTACACATCCAGCCATCACATGCAGATAATTCCTTTCAAAAACAGCAGAAAGAGGCTCGTTCTTGTCTTGGTCCCTTTTGAAGAATGAATGAAACCTTCCTAAGCCTTCCAGCAATTTCCCCCCAACTCCGATGGGTAGGAATTGTCACATACCCATGTGACCCGATAGGAGGCAAAAGAAATGAGACTTCTGGGATTAGTTTAGCCTCAGATTCTGCAGCTGAGAAGTTGATCAGCCACCTCTGAAGGACATGCAGCTTGCAGAAAATTAGGGTGGTGTTACCAAGGTGAAAAGGGGAAATGGCTTTAGAGTAGACAACAGAGATGCCCTGAGGGGTTGTGTAGGTTGTTCACTGCAGGAAGTCCCCTGGTTAAGAAGGCAAGTGGGGTTTAAACAGACCCACAGTCTACTCATCAAACCAGGTGTCCTTGGCATTGTGTCCACCCAGAGAGCTCACTGTTTTCTTTTCTTTTTCTTTTCTTTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTGCATCCCCCAGGCTGGAGTGCAGTGGCATGATCTTGGCTCACTGCAGCCTCCGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTAGGATTACAGGTGCGTGCCACCACGCCCAGCTAATTTTTATATGTTTAGTGGAAATGGAGTTTCACCATGTTGGTCAGGCTGGTCTCAAACTCCTGACCTCATGATCCGCCTTCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTTAGCCACTGCGCCCGGCCCTAGAGCTCACTGTTTTCTAGTTAGTCCATCTGGAAGTGGAGCCTTTTTCCAGTTTGCACAAATGTGCCATATTGGCTTGTAGCTGGCATGCATCCAAGTCCATAGGTCCTGCCTCTTCAATCCTGGCTTTCTAGGGCCTGGGATGATCATTGCTAGAACTGAGAGACCAGCCTGGCTCAGTGAACTTCAGGGCGTTCCGTTCATTCTTTCAGTAAATGTTTGCAGCACATGTGTTACATGTCAGGCAGTGAAACCCCCCACAGCAGCCTTCCCTCTCAGAGGATACATTTGTAACCATTACACAGTCATCAAAGGAATAATTTTTTTTAATCACCAGTGTGCATACAGTCATGGAGTTGGGTATTCCCAGCTACCAGGGAGGCTGAGGTGGGAGGATTGCTTGATGCCAGGAGTTAGGGAATATAGTGCACCGTGATTGGACTTGCGAATAGCCACTGCACTGCGGCCTGGACGACGTAGTGATACCCTGACTCTTATAAATAAATAAATGAATAAACACAATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176920-FUT2:NM_000511:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0153111=Glyco_transf_11=WD(100=91.3),PF102504=O-FucT=WD(100=29.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)