HsaINT0067229 @ hg19
Intron Retention
Gene
ENSG00000128683 | GAD1
Description
glutamate decarboxylase 1 (brain, 67kDa) [Source:HGNC Symbol;Acc:4092]
Coordinates
chr2:171693303-171700667:+
Coord C1 exon
chr2:171693303-171693393
Coord A exon
chr2:171693394-171700554
Coord C2 exon
chr2:171700555-171700667
Length
7161 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
TCTTCTTACCACCTTTCCAGGTT
3' ss Score
10.06
Exon sequences
Seq C1 exon
GTCATCCTCGATTTTTCAACCAGCTCTCCACTGGATTGGATATTATTGGCCTAGCTGGAGAATGGCTGACATCAACGGCCAATACCAACAT
Seq A exon
GTAAGTCTCATATGTTTTCATATAAGCAACCCTGATGTATGACTATGGCTTGTTGCTTTAAAAGTTCAGTCCCAGTGGTTCTATTTTATTAAAGTTTCCCTGGTCATTTTTTCTCTTAAAATCTTTAGGTTTATCACAGTTCTGATTTAATGGTAAATACTTGATAAACTATTGTTGAATTTAATAATGGAATTTAAGGAAAGCATGGTCATGAGAAATAATAACTCTAACTTCCAAAATGTAGTCTTGAAATTTCATGTTAAAAGACCCATTTCTGTTAATGGTGTATCTAAAGAGGTTATGTTTTGAGGTATGATCTTGGTTTTACCTTTTTCCACCCAAGCACATTGGTCCTTATCATTTAGGTCATGTTTCTTCCATAATTAAAGCAGCCATAAACCCACAAACCAATTTGATCAACCTATTGCTTAACTAAAAATTCTAAAACAAAATTCAGCCGATACTGATACAGTATATATTCTTTTCAAAATAAGTGATTGTTTTTCTAAATGTGACATTTTTTCATACTTGTTTGTGTAGGCAAAGCCTTCCTTTGTTTCTAAGTTCTTGAAAATTTACACAAAACTGACTCTGAGGTCCTGTAGGGTATGGGGTAGAAGTACTACCTGGGTAGTCTTATAGCAATCATCCCAGATTTTCCTCTACATGCATGTGCCCTCTTTTAAGAAAATGTCAGATTACTAATCGATGGAGGGGCCATCAGAGTACTGCCTTTGCTCTCAACACTAATGACAATGTTTTACCAGTATCTATACATCCAGACAATGGCACTACATCCTATTAAAGTATCCAAAGGAAAATAACAAAACAAATATCTTATAATAATTTAAAAACAACTATATAAGAATTACATGGGTGTCCATCACTGTGGAAATATTCAGAAAATAGCCACTCACTTTTTAAGTTCATAGAAAAGTAGATTCCAAAAAATGAATTTAGGTAAAAGGGTAGTATTGCTTAAAATGAGAAAATCCATTTGATATCAAGATAGAACGTAAATTACTGAAGTTTAAGGTAGTCTGTTTTTCTTAAACTGCTCTCAGCCAGAAAACCTGAAGGGCATTTAAAATTATATAGTGACCCATATGTATTCTAAAGCTGTTTAATGCTGTGACTCAGAATACTTAACTATATTCAGAAAAGTTTCTATTAATTAAGGATTCCTGTTTTCTTGGCTAATTTAAAACAACAGTGACAAATTTTAAAGAGCAAATGTGACAAGTGAAGCCTCTGGTGGTAAAAAAGCATAAAAGATTAAACTGATTGAAAAACTAAAACGATGTTCATGCTCCCTGCTTGCAGGTCATGGTTAGCTTCACAGACTGTCCATGTTGGGTCACTGAGATTTGGAAGAGCCAAGAGGAATACAGGTCAAAGATACAGTTGCTTGGAATTTGAACAAAAAGCTCCATTTAGCAATCTTTACTGTACTGTGATTTTTGAGATAAAAATATACCAGCCAGCACAGACATCATAGTAGAGTTAATTATAACTTGAGAAAAGACACTAATGTTTAATTGTAGTATCTAGCACTAAGGAACAATTTAAATTAGGAAATATAGTTGTTGTTTTTAACTCAACCATTTGGAAAATAAGTGAGGAAAACAGAGTAAAAGATACATATCTATTAAAGTCCAAGTACCCATATTAATACAAGCACTGAATTTACTCAGCACCTTTAAGTGTGTGTTCTGCAGGGCACTCAGCTGCTTTTTCCATGTATATATATGTCTCCAATCTCAAGGTAAATAACGGACCTCCCCCCTTTCAACCACTTATGACCAGATATTCCTAAACCAGAAAAATCCCACAAATTCTCCTTTTTTGGCATGTGTTCATAAAACCAAAGTCCCTTACTCTTCTCTTAGCTCAGCTGCAAAACACTAAAATGTGTCCCAGCCATCTGAGGTCAAGGCCAATCCAACTAAATGACATGTAGTAATTGCAGCTGTACTTGAATGGGAGATATTTATAAAATATGACCGATTCCAACAGATCGATAGAGAAGGTTATTTAAAATAGCAAAATAGTTTCTGTCAGTTCTGGAGACAAGGCATTGTCTGAAGAAGCAATAACTATTATCTAGAAATTGTTCTAAGCCAGTTGCCCTGGAAGATCATGAAATGTGGCAGCACTGTCAGGAGCTGAGGCAAAATTTGCTCCCTTGTGACAATTCCTTCTCCAGTCGGGAACAGTGTTCAAAATAAGTCTGGGAAAGAATGGCAAAAGGATCTTTCTATGGCAGTGCAGGATTTATTTAGTGATAATGCCTGGTTTTTGGTCCTGTACTCTCATTGAATTTAGGTGGCACCTGACATAGAAAATAAGAACTATATTCCTCAGTCATAGCCTCTTAAAAAGAACGATCCAATAACCTGACACAGGTGCAAAGTGCAAGGTGTCTGACTATTAGAATAGAAAGATGGTAGGTTGGGTGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGATGGGTCACCTAAAATGGGAGTTCGAGGCCAGCCTGGCCAACATGGTGAAACTCCATGTCTACTAAAAACACAAAAATGAGCCGGGTGTGGTGGCGGGTGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAGCCTGGGAGGTAGAGGTTGCAGTGAGCTGAGACTATGCCACCGCACTCCAGCCCGGGCGACAGAACGAGACTCCATCTCAAAAAAAAAAAAAAAAATCTATGTCCATGCCTTTACACCTGTTTCTGCACATAGCTGTGCAGTATATTCTTCTTCTAAGCAACGACCCAGTGAAGATCCAAACAAAAGTTCACAAATATGTAGTTATCCAAGGCACATACAGCTCTTTTCTTCCAGAACAGGGCCACCAAGCACAATTGCGCAGGTAGGGCCCGAGTGTAAACAACAGCCTGCCCTCAAACATCTAATGGCAATACATAATCTTAATGGCAAGATCTATCATAACCCTTTGCTATGAGGTTATGATTTCAAGTATCTAGCACTTTATTTTCATAGAAAATATCCAGGAGAAATTCTCTATGGGAGTTATTCATCATTTTACACCACCGGGCAGGTCATTAGATAGGAGCCTGCAGTAAGCAGTTCTCGTTTGTCATGGAAAAGCAGCTGTGACATAGACTTGGAATTCTGCTTAAACACACTAACTCGGAGATCTTAAAACAAACCACTGAATTTCTCTGAACCTCAGTTTTCTCATCAGGAAAATGGAGGATAATAGTATCCATCCTACAGAGTGGTTCTGAAGACTAAAAATGGCTCCAGTCCTAAGTGCCTAGCGTATACAAGGTACAGTGTTTGCACCTAGGAAAGGCAACCACCGCACAGTCACTGTTGCTATTTGAGACTTTCCTGACTCTTTTATTTCTGTCTCTCATCATCTGGACAGTAGAGTGTTTCCCTAAGCTCCCCTCAGCTATGTTACCTTTTAAGGTGAAGATGTACTACCTGCCACATCTGTAAGGAGAAGTCAAGAGGAGTATCAGGATAGAGTCAGCATGGAAGATTATTTCTCTCATTAAAGAAGTTCCCAGTTTGACAGTCACCAGGGATCCAGATTTTGTGTGCCTTTCTAATCCCTATTGTAGCACATGGCTCCCATCCTCAAAGTTGCATTATGGTGCAGCCTGGCTGCTGGAGCTCCAGCCATCACTCCGGTGTTCCAGAACTCAGAAAGGAAGGGAGGGAGGGAGGAAGGGAGGAAGGGAGGAAAGGAGGGAGGTAGGGAAGGGAGGGAGGGAGGGAGGGAGGGAAGGGCAAAAGAGACATACTCCTCTTTGATTAAAAAAAAATTAAAAAAAAAACCTTCTCAGAGGTCTCACACATTTCCATAAAGCCTCTTTAGCCAGAACTTAGTCCAAGACCACACCAAAAAAGGGTAGAAAATATAGTCTTCGATCAGAGTGAACAGCAACCCTAAATAAAATTTAACAAAGCAAGGGAAAATTGATATGGGTAGCAACAAGCAGACTCTGCCACACAAGAACTACAGCTTGTTGACAGTCAATTTGCCTTCGCTCTGAGTGAACTCCTCCGGGAAGGTGAGTTGAACCACTGCAAAAGGGCTGACTCACTTCCCTACTCGGAATATAGACATGCTCAGAATGCTCCTCTAGTGTCACTCCATGAATGCCACCATCCTACTGTTTTAAATCTTTACTTCCAATCCCATGTTCTTATGCTTCAACCCAGAGCTTCTGGCAGGTTTAGTTTCTGGTTCTGACTCTGAAATGTAATCTTGTACTTTGACTTTAGCATCTAACCAGCTTCTTCTGAATTCATATTTGACCTTTGATCTCTTGACTTCATTTGCTTTCCTCAGTCATTTAGGAAAACAGTACCCAACCTGGAATCTAGGTTGCAAGAGAAGAATCTCCTATAGTTCTATACAAAATGATGTGCCTATCTTCATTTTTTACTTGGAGAGAAGGACTACAGATTTCCTAGGATTCCCAAAGGGATCTGTAATCCCAATTAGGTGAAGAACCACTGGGCATGGTGGCTCACAACTGTAATCTCAGAACTTTGGGAGGCAAAGGCGGGAGGATCGCTTGAGGCCAAGAATTGAAGACCATCCTGGGCAATATAGTGAGACCTCCATCTCTACACAAAATAAAATAAAATAAAGTTAAAAATAAGAAATTTTTAAAAACTGCTTTGGTGAACTACAAGGCCTTCTTTAAGAGTGCAGCTGCACAGATTGTAAACATGGCCCAGGATGGGGCAGCAGGGTCAGAAGAAGTGTCAGGAATGAAGAACACCATGTCAGCCCATTTGTCAGGCCTGGCTGTGGATCAGCAGCCATGGACTGATATACTAGCTTTCAGGAGAGAGTGTCAGGCCTAAGCTAATAAGTCAGGAAAAGAGTGGAAAATTGGTCCTTTAGACTCAGGCAGGGACTATCAAACAGGATACAGCTAAGGCCAAGAACCAGATGCTAGAATCATCCTAGTAGGTTTCCTCCTCAAGGTTGAGAATGGTGTCTTCTAATATCTTAGTTTCCTTAGTACATAGGATGTCACCTGGCAGAGAATAGCCACTCAGTAAGTATTTGTTGAATAGAACTGAAAGAAAGTTTAGGAATCAGGTACCTGGCATAGATAAGGAACCTGAAATAGATTAGATCAGTTAAGCTCATGATAAACTCTCTAGACTCTTCCTCCTAATCCTGAGAGTAATGGCCATGTTCCTGGTCCTTGGGGAGGCTAATTCATGCAAACCTTGGGCCTAATTGGTTTTAAATCTGAAGCATGGAGTGGGACCTATGCCTGATATTCAGTCCCATTCCCTCTCCCTTGTCCATGTGGTTCCTGCCTGGCCAACACTGACTTGATCCTAAGCCAACTTTCATCCAGTCTTTGATATGGTTCTGATATTACGGTATGTGATTTCATTTGTTCCTTGCCTTACCCCAGAGAGCTTTCTTATATAGTACTGGGAGATTCTAGCACAGACACTGCCACCAGTATCTCCTCGCCATGCAAACATTTTTGTCATGTCAACATTTCCAAAAACCAGTGGAACCATTAATAACACATTTGTTCAAGAATGGTTAAAAGCCCATCATGAGTTTGCCTCTTGGTACACTTGGCAGCACAGGCTAAACCAGGAATCCTTCTCTTCTTCTTCCTTTATCAGGCCATCAGACATGAGGGAGTGTTGGTTGCTACGGTGATGGGGCTCAGAGCAGAACCAAAGCATGATTGTGACCTCCAGAGGTGATGGTAACTGCACACATGGTTTCCAAGGGTCTTCCTCCTAAATTTCCAGGGGCCTCCCAAGGAAAATGGACATATTCTTTTTGGAAATAAAATACTTCTACCAACATATCTGAGGATCCTTCAGGATCTTTTTGTCTTCTTTTACCTCCATGTGATTAATTTGACTGCTTTTTTCATCCACAATTAAAACTTAGTAGCTTCACCTGTGTCTTATGTAAAACAATAGTTATCTCATCCTTACAAATAGCTTTGCCTTACATTAAGCAAGCAAGAATTCCCATTAGTCTTCAACATTAGCACTTGGCTCAAACACCCTAACCAGTGATAAAGCTTCCCCATGTCACTTAGCTGAGTCAGTCTAGGCATCTCTTTTCGGTGAGGATGATCTGAGCCCAGCCTACAGACTCTAATGCTAAAGAATGCCAAGCAAAAACAAGAAAGACAAAAAGCCTCAGAGCTTAGTAAATATCTTTTTGTTTTCTGGCTTAATTTTCTGTGGACAGACCTTCCTTGATTTTTCTTAGGCCCCACGTTTGGTCTCACGATCTTGTTTCAATGACTAGTCTACCAGACTATGCCTCTGTGTTGAATTGCTTTGAAAAGAGCATGGCTTGCTACTTTTAAATCAGTTTCTTAGAAGACAAATGTAACCTTCCAAGATATCTGATGCCCACAGCTAGTTGTTTATGCCAGTTGACCGTCTTCTTGTTATTTATAATTTGTAATTAGAAAATCATCACTTAGAATTATTCTTGACAGATATTGACTTCAGAGAATTATAGAAACATAGCTGTCCTTGAGGATTATTACAGAAAAACCATGTAGATAATTATATTGAGATCTTTAAAACCTGGGTCAATATTTCCAATTATCTTCACAGTTAGCCTTCAGATGTTTACATTATTTTTAAAAGATAGACTTTGGCTCTGGCTTTTATATATTCTACAAGTGTGAAACTGGCAGTCAGCTTTTTTTTTTTTTTTTTTAAACAAATTGTAAACCAATTTTACATAGAACTTGGAATGCTTTTTTCAATTAACATTTGCATTGTCCTATAATCTTAGAGGTAAAAGGGACTCAGAAAAGTCATTTTCTTTCCTTCTATTCCTCTGGGTGGACCATGCCTAAGACATTCCATTCAGATAAGAATCTATTTTGTTGGTGAAGTATCACAGGGCTGGCACTTCCACCACCTCTCTCAGTAACCCAGGCTGGTTTCTGACATTTTATGATCGGCGACTTAATGCATTTCCAGGAAATGAATCATGTTAGTGGTTTGGAACAGCTTTTTTTTAGAACCCAACTACAAATACTAAACCAATCCTCTGTGTTCCTAAAATAAGTGGTTTGACTTCTTTATTTTCTTTCATCCTTCTTCTTACCACCTTTCCAG
Seq C2 exon
GTTTACATATGAAATTGCACCAGTGTTTGTCCTCATGGAACAAATAACACTTAAGAAGATGAGAGAGATAGTTGGATGGTCAAGTAAAGATGGTGATGGGATATTTTCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128683-GAD1:NM_000817:6
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0028214=Pyridoxal_deC=FE(39.5=100)
A:
NA
C2:
PF0028214=Pyridoxal_deC=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)