HsaINT0067235 @ hg19
Intron Retention
Gene
ENSG00000128683 | GAD1
Description
glutamate decarboxylase 1 (brain, 67kDa) [Source:HGNC Symbol;Acc:4092]
Coordinates
chr2:171678597-171686143:+
Coord C1 exon
chr2:171678597-171678659
Coord A exon
chr2:171678660-171685984
Coord C2 exon
chr2:171685985-171686143
Length
7325 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
3' ss Seq
ACCAGCTTCTTGTGCCATAGGCT
3' ss Score
7.52
Exon sequences
Seq C1 exon
CGTACGATACCTGGTGCGGCGTGGCCCATGGATGCACCAGAAAACTGGGGCTCAAGATCTGCG
Seq A exon
GTAAGTGACAGGACCCACTGGGGCCCGGCTGGGTGGCGCGGCGGGCGGACCTTTGGGGCTTGGGAGACTGGGACGCAAGCGGAGGGGGATCCGGGCTCATGGGTCTGATTTTCTAATGTAATTACAGCCAGGACAGCCAGCGACCACGCTCCCCTACAGGCCCTGACCCTCCTCTGCCCGCCCCAGACCTGGTCCCCAGGGGTCTTTTCCTCTGGAGTCCCCAATCCCCAACACCCAGTGGAGCGAACGCCGGGTGCCCTGCCTGGGCGCAGAAGCGGGAGGAAAGCGCCCCCGCGCGGCAACCCCGCCTTCCTAGCCCTGCGCGCAAGCAGCTCCCACCCGGTGCCGTGCACTCTGCCTGCGCGTCCCAAAGGTCGCGTAGAAAAGGTGAACTGATCTGGCTTGCTGGAGAGCAGACCAAAGGCGGTGTATCTGCCTAAAGCTGTAGCTGACACGTCTCCCCCATCCCCTACATCATCGCCTACCCCTCACTCGCACCTCCACCCGCGCAGTCGGGTCGCATTGAAAGTGGTCTCTCCACCTTGAGGGGTTTTGCCCTGAGATGTCATAACGGATTCAAGTTTCTTTCTTTGGGGCTTCGGAGGCTAAAGAAAAGGATTGCCTGGAGCCCTCCATGGCCTGCCTGAGGGAGGCACGAGGGTTTGCCTGGCGCATCCTTGAAGGCGAGGAGGGAAGGGAAAGGGGACGAGCAGGGACGAGGAGCCGCAGGCGGCGAAAGAACCGGGAAGGAAGAAAATAGATCAGGGAGCTGGAGAGGAGAAAGAACTGCTCTCTGGAGACAGGAGGGTCTGAAATGAAAACGCCCAAAGGATGTAATTTTTTTAAAGGAAAAAGGGAGATTTGTTCGAAGGGACACAGCTGAGTGATTCTGGCTGAACAATGAGGCCTCACTTTCCTGGCTACATTTCACCGACTAAAATTCTCTAGCCTTATCGGGCCAGAAAATACGGATGTCCCCGGGCAGAGGTTGGAGAGGCGGGGGAAGATTAACGGGCGGCTTATTAAAGAGCCATCCGTCAGCTCCTGCGCGCGGGAGATAGCGGCAGAGCAGGCACGGGACACGCCCGCCCGCCCTAGCCCCGGAGCGCCGAGAGCCGCCCGCCGCCTGGGTGCTCTCTGCACCTGATCTTCCCAGCCTCCCTGGGTCCCGGGGCGAGGGCGGTGGCAGTTTGCAGTCAGAGCAGAGTGGCCGCTTTGGGGAACTACTCCCTTCCCTGCTTGGCCGCGCCGCGCCCTCCCTGCATTTCTGGGGCTCTGTCCTCTAGACCCTGGGACTCGGCGTTTAGGGAGGAACAGGCGCTCCATTCCTAGACCCAGCCATTTTCCACCGAAAGCCCAGCCCTGCCGCCGGGCGGCCTGGGAGTTTGGCCTTCTCCCCAGCGCAGGACGCCCGTGGGGCAAGGCCAGGGCTGCATCCCTGTGCTGGGGCAGCCGGCGGCCGCGGATCTTTGTTCTATAAATAGCCCCGTCCCACTCCCACCCCCACCTCCACCCCCACCCTGCCGCCATTCTGGGCTTAATGGCCCGTTTCGCGCCAGGTCCCTTCGGCGGCCGCAGCGCTCGGCTTCTGCAGCCGTCATTGTCATGCAGCCAGCCGGGCAGGCAGAACTGAGCGAGCCCTGGGCAGCCGAGGACAGGGTAGGGGCAGGCTCTGGGCGACGGCTCCTTACCAGCGGCGCCTGGCCTGCTGAGGGTGGGGGGCAGCCCTCATTCACCCCCATCCTGCCCCCTGCTGTCCCCTGCTCCTCTGGCTGCAGGCGCTCCACTTCCGCGGGAATAAAAGGTCTAAGTGCTTCTTATGGGGACATACCCGACGAGTTCAGAAAGGCTAAAGAGGCGGGAAAGAGTGGGGCTTCGCTGGGTCCGGAAATAGGGAAGCCGGAGTTGGCCTCCACTCCCCCTCCCCCACTGTCAGCCGAAGCTAGGAGGGAGAGCTCCTGGGGGCTACAGTCCTCAGAGAGTTTCCTCCCTGTGTCTGCTCCCCACAACCCATGGTAGTCTGTTGAGGAGAAATTGCCTTGGGCTAAAATGCCCCGCTTTTGGGGCCACAGGTTAGGAGGCTTCCCATTAGGTTTGATTGTGAAAGAAAACAAAACACCAAGATTTATTTTCCACACCTTGAGACAACTTTGGCTTTCCATTTTAATCTAGTGGAGGCAGAGTGCAGTCTTTTGTGTTGGCCCTGGGTCCACAGCTCCCTGCCTGCCTACACACACACACACACACACACACACACACACACACACACACCCCTCCCTTCATCCCTGGAGGGATGGACCTGGAGGGTCCCTTCTTGACTTGACACCATCCAGGTTGGTTTACCCTTTCACATTAAGAGAGCAGAGGAACTCATGGTCCTCTTCCCACTTCCAAACCCACTGCCCTGGATGACTCTCAGAAGCACCCTCAGTGCCTTGCCAAAATTCAACCCCCACCCACTCTCCCCCTGCCCTTCCCCAAAATCCACAGAATGAAGCTGCAAGGAAGGCCCTGGGCCCCACTAGTGGTAGCCCTGAAGGCAGAATTAGCTCTGGAGGCAGAATCCCCCAGGGAGAGTAATCAGCTAGAAGAAACCCATGGTCTTGCCAAGAGCTGGAGAGTGCTGCAGGCATGGTGGCATGACCTAAATACGATGAGTTGCAGGGATCCCTAAGTTCTGGCTCCAGGCTCTGCTAACTTCCCAGGGTGTCCTTGGGCTTCCATCACTTATCTCTTGCTGCCAACTACAGCCCCTGAGCTGTTTTATTTAGCCTACACTCGTGTGTGTGTGTGTGTGTGTGTATGTATGTGTGTGTAATTTTGTATCAAGTGCCAAACCTTAAAAATAGAGAGATTTCAAGTGCTCTCTTTTTCTGGTTTCTCTTGAAAAAACTTGGGGGTGGGCAATGGGGAGGGAAACATGGCAGGTGCTGTTAGCCCAAGAAAATCAGAAAAAGAAGTCATGGTGGCTCACATCTGTAATCCCAACACTTTGGGAGGCCAAGGTGGTAGGATCATTTGAGGCCAGGAGTTTGAGACTAGCCTGAGCAGCATAGGGAGACCCCATCTCTACAAAAACTTTCAAAAAATTAGCCAGGTGTGGTGGCCACATAGCTGCAGTCCTAGCTACTCAGGAGGATGAGGCAGGAGGATCGCTTGAGCCCAGGAGTTTGAAATTACAATGAGCTATGATGGCGCCACTACACTCCAGTCTGGACAACAGCAATACAGTATGACCCTGTCTCAAAAACAAACAAACAAATGAAAAAGAGCCCCTCCGTCTATGCATATGCAATTCCATGCCATAGCTTGGTGAACAGAGAATGTGCTGGGCTTCAGCTCCCACGTGCCCTGTTGGCCATAGGTGTTTATGCCATACACAGCTCAAAGCCCCACTTGGCAACAACTGGCTGGAGCCAGGTGCTTTCTAGCTACACATACCTGTGCGCACATGCACGCACACATACACATACACACTCTCTCACTGGGCCCCATAAGCCTTTGAGTTTGGCAGCAGGGGTGAGGAACCTGCAGCAGGAGCTCCCCTCAGCTCAGAGGTGGAGTCATGATTTTTCTCCCCTTGCGGCTGGCCAGTGTGCTAGCACCCAACCAAACACAACTGCAGCTTTGCCTCTCCTCTGCTTTCCTCTTTGCCTCTAAGAATGTAGAGCTCTGTGACCAGTTACCCACAGGCTTAAACTAGGTCCTCGAAGCTGGGGTGTAGAGCAAGAGGGAGTACACTCGGCTTCATTCTCTGGGACCCCTTCTTACAGGACCCCTTGCTAGCCAGGGAAATTGTCAAGGCACTGACCTCCATGTCATCCACCACCTCTTCATCCTTGGAGAAGCAGTTCCTTCCAGGGCCTCTCAGAGCCAAGGGAGGCCTGGTTCACCTACCTTTCTGAGGATCCCAGTATTTTAGAGAACAAACACCTTCCTAAACAAAGTGAAAGACATGTGACAATATATATTATATGTTTATATTAGCAAATTAATTGTTTTAACATAAATTATAATGCAGTGTAAGTGTGCTATTCATAAAATAATTACAGGATTTAGAGAGGATTCTGATTCCTAGTACATTACTGGAAGTGCAGCCCAAGGAATGGGATGCAGGTTTAAAGCCGTGTCGTAGGGCCGGGCGCAGTGGCTCGCACCTGTAATCCCAGCACTTTGGGAGGCCGAGACAGGTGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGACCAACATGGCGAAACCCCCATCTCTACTAAAAATACAAAAATTAGCCAGACGTGGTGGTAGGCACCTGTAATCCCAACTACTTGGGAGGCTGAGGCAAGAGAATCACTTGAACTTGGGAGCTGGAGGTTGTGGTGAGCCGAGATCATGCCACTGCACTCCAGCCTGGGTGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAGCTGTGGCATAACGATCGTTTCTCAGCCTCATGAGCGCATCTCTGGGAGAGCCTGTGTCAAAACCTCAAGCCGAGTTTCTGCTTCCTGCAGCTGCCCAGAGGGAAGGGGCTTCAAGGTGGGGAGACTCAGGGAGTGAGTCAGAAGCCTAAGCAGGCGTCGGGGACAACAGAGTGGAGGTTCAGCTGGGCAGGACCTCACTACATGAGGCCACATGGGTTTGGTCTTTCAAGTCTGGCAAATTCCACAGCTCAATGTTCTGGGATGAGAGGAGCAGTCTCAGAGTTCAGGTGCCATCTGATCCTGCATCCCTCTGGCAAATGAGTGCTGGCTCCTGGCTCTGGACTTTGAGGATTTGGAGGAGGAATTCAGGAAGTAGGCAAAGAGATATGGAAAAGGATACAATCCCATCTTTATACCCAAGTGTGGAGCTCTATTATAGTGTATTTCCCCCCTTCTCATGTCCTTTGGGCTTTAGTGATAAATGTAAAAGGTGCTGGGAGCAACAAAAAGCTTGGTGGCTCTGCTTTCCCCTTCTTCCCTCCAGAAATAGCCCCTGGCTCCCTTGTGTGGGAGGATTCTAATCACCGCAGCCCTCCCATGCATCCCCCCTTCTCCCACCCATCACAGTTGAATTGTAGTCCTGGGAAGCAAAGCTGAATTCTCCAGATTAACTTGCCTTTTTGCACCTCTTGGGACTTTCTTCCAAGTCTGCCTTGTGACACGTGTGACTCCGCAAGTTTCTTGGTATTTACAGAAACAGCTTTGGGGTCACCAAGAAGCTTAGAACCTTTTTCCTCTTTTCAGTGTGCTGCATTTTGGGCTAAGACTGAGGCTGAATTGAAGGAGGAGAAGCCAAAGGAAAGAGCAGACGTGCGGGCCAGGAGCCCCACAGGGGATGGTGGAGATGTGGAGGGAGTGTGCTCCACGCTGGCAGGTTCTCCTGCCCTTTTGGCTTAACCCTCTTTCCCCGTTTGCTGCCGGAGTTTGTCCTGCTCACCTTGGGCAGGAGAACTTTCCACTCACTCCGAGGGGCAGAGGTGAGGCACTGAGAATCCCGCCCTGGGCTCAGATCCCTCCTGTCATCTCTGTGGAGTTCTTGGATGACTAGTTTTATTCCAGCATTTGTCACCATCTGCCAGGCTTGTAGGCTCCTGGAGGGCAGGGGATCTGTCCCACTAGCTTTATCAGTCCCCAATCCTAGATGCTTAGCAAAGTGTTTTTGTACAACAGGTGCTCAATAAGTACTTATAGAATTAAATGGCAACACAGAAGATTGAAGCTTTTTTTTGTCTCACAGTACCTTCATTCAAGGAGAGGGGGTGGTGCAAGAAAAGCTGCATTCAGGTTTGCATTCAGAAAAATACCACTTACGTTCAACCCTGTGAGCATTACCTGGTGCTGGAGGAAAGTGTCTGCCCGAATCCTCTGTGTTGGACCTCACTACTTCTCCTTCTGCCATCCTCACCCCTCCTCCTTCTGCTGTCCTCCCTCTGCTGTCCTCACCCCTCCTCCTTCTGCTGTCCTCCCTCTGCTGTCCTCACCCTCCTCCCTCTGCTGTCCTCACCCTCCTCCCTCTGCTGTCCTCGCCCTCCTCTCTCTGCTGTCCTCACCTCTCCTCTCTCTGCTATCCTCACCCCTCCTCTTTCTGCTGTCCTCACCCCTCCTCTCTCTGCTGTCCTCACCCCTCCCCTTCCCTCTGCTGTCCTCACCCTCCTCCCTCTGCTGTCCTCACCCTCTTCCCTCTGCTGTCATCTTCCTCCCTCTGCTGTCCTCATCCCCTTCCCTCTGCTGTCCTCACCCTCCTCCCTCTGCTGTCCCCACCCTCCTCCCTCTGCTGTCCTCACCCCTCCTCTTCCCTCCGCGGTCCTCGCTGTCCTCCCTCTGCTGTCCTTGATCTCCTCCCTCTGCTGTCCTTGATCTCCTCCCTCTGCTGTCCTTGCTCTCCTCCCTCTGCTGTCCTCACCCTCCTACCTCTGCTGTCCTCACCGTCCTCCTCTGCTGTCCTCACCCCTCCTCTTCCCTCTGTTGTCCTTGCCCTCCTCCCTCTGCTGTCCTCACCCTCCTCCCTCTGCTGTCCTCACCCTCCTCCCCTGTTGTCCTCACCCTCCTCCTCTGTTGTCCACACCCTTCTCCCTCTGCTGTCCTCACCCTCCTCCCTCTGCTGTCCTCGCCCTCCTACCTCTGCTGTCCTCACCCTCCTCCCTCTGCTGTCCTCACCCCTCCTCTTCCCTCTGCCGTCCTCACCTCTCCTCCCTCTGCTGTCCTCGCCTTCCTCCCTCTGCGGTCCTTGCTCTCCTCCCTCTGTGGTCCTCACTCTCCTTCCTCTGCTGTCCTCACCCCTCCTCATCTCTCTGCTGTCCTCACCTCTCCTCCCTCTGCTATCCTCATCTTCCTCCCTCAGCTGTCCTCACCTCTCCTCCTCCCTCTGCTGTCCTCACCCTCCTCCCTCAGCTGTCCTCACCTCTCCTCCTACCTCTGCTGTTCTCTCCCCTCCTCCTTCTGCTTATACAGCCCATAAACAGTGCTGGCAGCATCTTCTCTGATTGTGTCTCCTCCTTTAAAGCCCTATCCTGGGGCTGGTCACTGGAGTGGAAGCTGTCCAACTTACTTAATTGTGAGTTCACTGTCACATTCAGAGAGGAGAACGGGCTTCACTTACTGTTTTTCTCTCTTGCATGACTGGGCCTCTGCCACTGATGACATTTGGCACTGCCCCCCTCCCTGCCTGAAGGCGAGCAGTGCCAGAGCCACTGTATTTAAAACACAGACACTCACTTCTTTTCTCAGGAGAAACAAGAGCCCTGCTTGGAGAGTTGATTCACTCTGCAGCTGACCCTCAGGGGCTGGGCAGTTTGCAGCACTCTCTCTGACCAGCTTCTTGTGCCATAG
Seq C2 exon
GCTTCTTGCAAAGGACCAACAGCCTGGAAGAGAAGAGTCGCCTTGTGAGTGCCTTCAAGGAGAGGCAATCCTCCAAGAACCTGCTTTCCTGTGAAAACAGCGACCGGGATGCCCGCTTCCGGCGCACAGAGACTGACTTCTCTAATCTGTTTGCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128683-GAD1:NM_013445:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=NA C2=0.033
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)