DreINT0071014 @ danRer10
Intron Retention
Gene
ENSDARG00000093411 | gad1a
Description
glutamate decarboxylase 1a [Source:ZFIN;Acc:ZDB-GENE-070912-472]
Coordinates
chr9:3675259-3679349:-
Coord C1 exon
chr9:3679308-3679349
Coord A exon
chr9:3675412-3679307
Coord C2 exon
chr9:3675259-3675411
Length
3896 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
TTCTCTGTGTAATGATATAGGGT
3' ss Score
6.32
Exon sequences
Seq C1 exon
TCGCTCATGGATGTACAAGGAAGCTTGGAATGAAGATATGTG
Seq A exon
GTGAGTTGACGCCTCCATAAACAATTAAAGGGATAGTTCACCAAAATCAAATAAATAATGCTACATAAAAAAATGTATACACCCAAGTGATCCCAAATTTTGTAAGTTTCTTCTGTTGAACATAAAGGAAGACATATTGACGTCTTTAGTAGGAAATCTCCAATTTTTCGTCAAATACACAGGTATAAATAAACGCACGTGTCTTTAATAGTCTAGTCCATTTTTCATTCACAGCTAGACACTGATTATATTTTTACTAACAGCTCAAATTTAGCCTCGTTTTAGCCAGGACATCCATGCTATAGACGTCTTCTAGATGTTTATTAAACATAAAAAAATATTAGTGGAGTTCTTTTTTCTTTTTAAAACAAAAGAAGATATGAAGCATTCAGATGCAAAAAGTCTAAAGTGCAGTCTGAAATTTGTTCTAAAATAAGTTATTTTACTTTAAGGGCAATGCAAAGAACATATTATTTGCGATAAAGGTCGATTTACTGAACATACACACAGGAGCTTAAGAAAAATGACCACTTTAGCAGACATTTTAGAGGTTTTTGCATTTGAACTCTTCATATCTTTCTTTGTTTTTTAATAAAAAAGTATCCCACCAATCATTTATAGTGTTTCATATACATCTAATAGACGTCTAGCATTGATATATTGGCTAAAACGAGGCAAAATTAGGGCTGTCAGTGAAAATATAATAAATGTCTAACTATGAATAAACCAAAATTGGATTAATACAAGGCGCACTCACAGAAATACTTGAGCTGTCACTGGGTGGTGCCTTTTCAAAATGTACAAATTTGTACCTAGGTTCATATTAATAACTCAAGGGTATATATTAGTACCTAAAAAGTACAAAAGTGTTCCTCTTAAAATGTGTAGGTACTAATATATACTTTTGAGGTACCAATATGGACCATTCAAGTACAAATGTACTCTTTTGGCCCATTTACAGCTCTCATACCTTTATTTCTGAGAGTGTGTGGTTATTTATTCTTGTGTATTTGATGAAAGCACACTTGCAGGTAACTAAATTAAAGATGTTGCAGGCATTAAATCAATTACCAAGTTTTATTAATAGAGTACCTGTATGGGACGTTCTTATTTATTTTGTTACGTTGGGACGTACTGACAACGTCGTGATTTGGTAATGGGATGGTAATGGAGTTACCAGCATACGATGAGGTTACGTTGTCTGTTGGGAAGTCAGGAATTACCAAAATTCCCAATATGTTTCATAGCTTGTCTTTTCTTATATGTCTTGTGTATATTTTCACAGATAGACCATTTTCCCTTGTTTTAGCTACTTTTAGACGTCTATTAGACATCTTTTAGTCGATGATTGCTGAGACTCATGATGTTTGAATGGGTTTGTAAATGATGACAGAATGTTTATTTTTGGGCGAACTCTCCTTTTAAGTGAATAAGATGTTATTTAAGTGTGCAATATTTTTAAAAGCGCTATTGTAAACTGTTGTGTTCAATATTAATTGTTTTATAATGAGCATATGTATCATGTGGCGCCCCCTTTTGGTGGTTTCAGATAGGCACCTAATTGGCAGTCAAGAGCTTCATGGCAATTACCTCTATTATTCAGCCATGAATAGAACAGGAGGCTGAAAATGCTTTTCTTTTTTTAAAGACTTTTTTTAAAACGGGTTGACTCGTGCTGAAATGATGCAGTGCAGTAAATAACCCACCAAAGAGGGGGGAAATCACACATTTTGGGTGAATTTGCTGGATCATAGATTAATTGGCTGTATGATTTCGAAATAAAATCCACTAAGAAAAGGTTAACACATTTTAGTTTACTGTAGATAAAATAAAGAATAGCTTTATGATTGTCCTGTGCGGCATCAAGTTAAAAGGCGAGCAGATAAATCTGTGTGCGTCCCAGGAGAATTTAGGCTCAACGGAAATCTATTAAATGACAATCCGTCAGGCCTCTGTTTTGCCGAGATAACACAAGTCGCCTTTACATAATGCTTTACTGATAAGAGCCGCTCTCCATATAAATGGTCCTCCGTGATGAATTAGCGAGTCGTGCTTTTATGGTTGTGTTGCTTTCAATAGATAAACGCAAATATAAATTGCCGAAATGTAAATAAGACTGACTATAAAATGGCAATGCGTTTTACGAATTAAAAAAAAAAACGTACATCTCAGAATCGGCTTACATGATGTATTGCGTGATTAAAACAAAGGTTCATTTGGCATATTTGAAATGTGGCTTCCGTAGAAATAGAGCATCGCTTCAATGATCCCATGTGAATCTAAAGATGATGAAAAGGACACTGAGGAAATGGCAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGATGCGGCTAAGAGCATCCACAGTATAGGATGTGGGCCAGAAAATTGGTGGTTCATTCTGCTGTGCATAGAATAAAATAGAATAAAGCATATAATAAAACAGAGCAGAATAGAACATGCTAGAGTAAAATAGATGTGGCTATCCACAGCATAAAACGTATGCCAGAAAAATTGGTGGTTCATTCCACTGTGACACCTGATAAATCAAGGACTAATAAGCCAAAGGAAAATGAGTGATTGAGAATAGACTACTGCTTTAGTAGAATAAAATAAAGCAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATGCGGCTGGAAGGGCCATAAAACATGCCAGAGTATTTAGTGGTTCATTCCGCTGTAGCGACACCTGCTAAACGACTAATAAGCCAAAGGAAAGTGAGCGAGTGAGAACAGAGCTTAGAATAGAATAGAATAGAATAGAAAATAGAATAGAATAGATGTGGCTATTCACAGCATTAAACGTATGCCAGAAGAATTGGCAGTTCATTCCACTGTGACACCTGATAAATCAAGGACTAATAATCCAAAGTGATTGAGAATATACTACTGCCCAGTTTAGTATAAAATAGTGCAGAATAGAACATGCTAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATGCAGCTGGAAGGGTCATAAAACATATGCCAAAAAAACATAAGAGTATTTGGTGGTTCATTCCGCTGTGGCGACACCTGCTAAACGGCTAAGTCAAAGCAAAGTGAGTGAGTGAGAATAGGCCAGTTGAGCTTAGAATAGAATAGAATAGAATAGATTGTGGCTATCCACAGCATAAAACGTTTGCCAGAAAAATTGGCGGTTCATTCCGCTGTAGTGGCACCTGAAAAATCAAGGACTAATAAGCCAAAGGAAAGTGAGTGTTTGGGAATAGACTTCTGCTTTAGTAAAATAAAATAGAGCAGAATAGAACATGCCAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATCTGCAGCATAATACTTTTTCTGTTGTAGCCTAGCCTACTGATGATGAGATCTGTTGGTTTAAATGTAAAGCGCTGTAGTAATGTACAGAATCAAATACCCTTATATAGTCTACATTAAACTAGACATTAGCCTACGTCATATCGTCACCGAATTCTAGCGCTCACGTGCGGTACTCTGAGCTGATGATGATGATGAAGGTCCAGTGGGCATTTACAGTCCTCCTAAATCACTGTTACTCTGATGTCATTACCGGTGACCTCCTACAGATAACATGTACCATAAAAGCACACACGGGTCGGACAGTAGACATCTCCACACTGCCCCGAAGAGAAGTTCACAGACTTTTCAGACAGCTGTGCTCAATTATCAGCTGCTATGTTTGGAAAAGGTAGCTCATTTTTGCCTGCTTCTCTGTGTAATGATATAG
Seq C2 exon
GGTTCTTGCAGAAGAACAATAATGTTGACGACAAGGGTCGAATTGTCGGGTTGTTTAACGACCAGCAGCCCAGGAGTATTTTAACCCGGGACAACGAGCGAGATTCCCGCTTCAGACGCACAGAGACGGACTTCTCCAATCTGTATGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093411:ENSDART00000140425:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=NA C2=0.202
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]