RnoINT0063558 @ rn6
Intron Retention
Gene
ENSRNOG00000000007 | Gad1
Description
glutamate decarboxylase 1 [Source:RGD Symbol;Acc:2652]
Coordinates
chr3:56866361-56871811:+
Coord C1 exon
chr3:56866361-56866423
Coord A exon
chr3:56866424-56871652
Coord C2 exon
chr3:56871653-56871811
Length
5229 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
CCTAGCTTCTTGCATTTTAGGCT
3' ss Score
7.85
Exon sequences
Seq C1 exon
CATATGATACTTGGTGTGGCGTAGCCCATGGATGCACCAGAAAACTGGGCCTGAAGATCTGTG
Seq A exon
GTAAGTAAACAGGCCCCCAGGGGATGGCTCTCAAGGGTGGAGCGTTGTGAATTTGTAGGAGAGTCTCACCTCCGCAGGGGGATTCTGACCCTTCGATTTAGTATTCTAACTGCTTTACTGTCCCAGCGCCCAGCGGATGCGGTCTCTTGGAGGCTCTGACCCTCCTGTGGCCTCTCTCACTTGGCAGGAGAGGCCTTTTCCTTTGGAGTCCTTATAACCAGAAACCGCAGAGTTCTGGGGACTCATTTCACCGAGTGTGGCCTCGGAAATTGGGATACAGCACCCCCAAGCGGCAGCCGGGGTATCCTCGCCGGCGCCGGGCTGCTTGGACTAGTGCTTTCTGCTCTCGAATCTGTAAAATCTCATAAAAAGTGTGAACTGGTCTGATTTTCCCAGCGAACAGACCAAAGACGCAGTATCTATCAAGGCTGTAACTGACCCTTTGTGGTTGCTCACTCCGTCCTCCATCACCCCTACACACACACACACATACACACACACACACACACACACACACACACACACACACACACCATTGAAAGTGACTTCCCTAACTTGTGGGGGTTTGCACCTAATTGCCATGGTAATTCAAATTTCGTTCCTGGGAGGCTCCGGGGGCCCAAGAAAGGAAAGGATTGTCTGCTGCACTGGATAGCTTGTCTAGGGGAGGTGCTGGCACAGTGGGCTAGACCGTTTGCCCTGCAGGTCTTCGACGGAGCAAGAAAGGGGGGCGGGGAGCTGCAAGGAGGGAGGGAACGTTGGAGGGGGTGGTTGTCTGTCACGATTTGCCAGCAGGAAAGGAAAACAGATCCGAGAGCTGGAGAGGAAAAGGAGAGGATGTGAAATGAAAACGCCCAAGGGATTTTTTTTTTTTAAGATTAAAAAAAAAAGGGGGAGGAGGATTTGTTCGAAGGGATACAGCCGAGCGGCTCCGGCTGAACAATGAGGACTTGCTTTCCTGACTACATTTCACTGTCTAAAATTCTCTAGCCTTATCGGGCCTGAAAATACGGGTGTCCCCGGGCAGGGGGTGGAGAGGCGGGGGAAGATTAACGAGGGGCTTATTAAAGAGCCATCCGTCAGCTGCTGCGCTCGAGATAGCAGCCGAGCGGGCGCGGGGTGCGGAGCCCTCCCCAGCCCAGGAAGCTCAGGGAGCCCCGAGGGGAGTGGGTGCTATTGAGGCCTGACCTTCCCGCACCCCTTATGCCCCTCCCCCCTGCTTCCCGCTGTGGCTGTTCAGAATCGTTGGGGAGAGTGGTTATTTAGGGCCTTGGGAAAACAGCGTCCTTCCTTGTTTGGCCGTGCAGCGCCCTCCTTGCATCACTGGGGCTCTGGATCCGGGCATCCAGTATTTACGGTGGCGAAGATCTAGTGCATTTGCTCAGTTGCGAGACGTAGTGCATTTTCTGGAAAATCTTAGCCCTCCGGCCATAGGACCCAGAGGTTTGGGGACGTGACCCAATCCCCAGCGCTCAAAACTGGTGGGCAACACCAGAAGCGGTCTCAGCGTCGACAGCCCTGAGCTCTGTTCTATTAATAGCCTCTTCCCACTCCCACCAAGCCTTTCCTGGCTTAATGGTCCGTTTCCTGCCTGGTCCCTCTTGGCTCTCGCCTTCTGCCTCTGCCATTGTCATGCAACAGCCACAGGCAGCAACCGATTGGCCATCAGAACGGAAGGAACCCTGGGGTCTACCTGGGCTACACTCCAGGTGAACGCCACTTTTCTTAGAGGCTTCTGGCCTGTGGGAGCGAGGGTGTGTAGGGTCAGTCGTCATCCTGCCTCCTGCTGCTCTTGGTACTGGTCCTCCGAGGTCCAAATGGTCCTGTTGGAGACAAACAGGATGTCCTGAAAGGGAAAGGGGCCGGTTAAAAAAAAAGTTAGACCGGTTAAGACAGGAGTGGAGGCTCTGAGTTATCGCTACATTTTCCACCTCTTCTCACAACCAACGCCATGAGGCAGTGGAGATGGAGGTGGGGCTGTCATCCATAAAGAGATTCCTGTCTGTATACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTATGGCCTGAGTAACAGGGAGGGGAGCAGAGGATGGGAGTTTCCAGCAAAATAACGTAAGGATCCATTCTCCATGCTTTGGGCCAACTCTGGCTGTTCATTTTAAGCTAGTGGAAGCCGTGTAATGTTGACTCAATCTACAGCCTCCGTTCCAGCCCCTTCCCAAACTCACTTAATCCCAGACCTTTCTGCCTGAGGAGTAGTTCACCTTCTTGACCTAACACCACGGTTGGCTTGACAGCCTAGGATCCTAAGATCTAATAGTCTCTTTCTATCCTTGAATCCATCACCCCAGAAGGTCCCCCTGAGCATCTGCATGTCTTGCTAGGATGCAGTTCTCACCCATTCCCTACCCTGCTTCTTCTTACTCCAGGAAATGGAGCTGCAAGGATGGCCATGGGTGTCCCTACTCATGCTCCAGAGGCTGAACCCCAGGGAGAATAATCAGATGGGAGAAACCCAGGGCTCTGCCACGAGCTGGAGAGTGGCTGCAGGCATGGTGGCATGACCTAGATAGAGTAAAAACGGCAAGCACATGGCAAAAACTGAGCTCTGCCTTTGGTCTTCCATTGCTTTTCTCTGTAGAGGTCCAGATCCTGCTGCTCAGTCAGTCCCTCCACACATGTATGTGTTTAAGGTTTTAATCATTTGCCTATTTTAAAGTAAGAGATACCTCAGGTACTCCATATCTCTGGTTTCTTGTTAAAAAAATATGTAGGCAATCTGTTAATATGCTGTGTGAGAAGAAGAAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGAGGAGGAGGAGAAGGAGAAGGAGAGGAAGGGGAAGGGGAAGAAGGAGGAGGAGGAGGAGGAGAAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGCAGCAGCTCCTTTCTCTAAGTGGCTTTGATGCTGGACTTCAGCATCCCCTGTGCCCTCTGCCCAGTGTCTTTACGCCACACCAAGCTTGGAGCTCTACCTGCAAACAGCTGTCTGGAGCGTGCTACTCTCTGGTTCCACAGGACTCACTGGGAGTAAGAATGAGGAACAGCTACCAGCAGAGGGGAAGTCCTTTTGGGATGCTGCCCATCTTTATTTGACTGTGGGTGACTGATCATCTACGACTTGATCCAACACAACTTCAAGCTCTCTCTCCTAGGATAGTTATGGGCTAGCACTAAATGCTGGTGGCTGGAGTATAGAACAACAGAGACTATAGGGTGTTCCTGGGAAGTCCTAGGGACCCCAGCCAGGACCCCTTGCTATTCAGACCATTGTTAAAGTACTCTCTCAATATTATTCTCCATTCAATTTCATTCTCCATCTCACTTCATCCTCCACCTTGGAGAAGTGAATAGTTCCTGGCAAGGCCTCTCTGAGTCAAGAGGAGCTTGGATCATTTTAAAGGATCCAAATAATTAAAAACAAAACAATACTTTCCTAAATAAAGTGAAAGAAACAAGATTGTATATTAAATGTTTATATCAGCAATCCCTGGTACTAGAAGAAGAAGAAAAAAAAAACACAGTTAACATCACACCAGTGTTTTAAACACCGAGATCTAGAGAAAGTTCTGATTCTTGCATTACAGAAACGGTGGCTCCAAATGGCACACAGACGTAAAGTTACGTCTAAAGGACATCTCTGGGTGAGCCTGTGTGGAAACCGTCTTGGGAGAGGATATCTAAAGCCTACTCTCCCTGCCTCTGGCTTCCAAAAAGGCTGCAAGGTAGAAAGGTGTGGGGTCTGTCAGGAGTGAGCTGCAAGCCTGGGCAGATGACAGAGACTCCAGAGTAGGTCTTAGATGGGCAGGTCCACCCTTCACTGGGTCACATGGGTTGGGTTTCTCCAGCCAGGCACACCCTCTAACCCTTATAATGGACAAAGGGAAGGAATGCTGGGGGTCAGGACCCTATATCCCTCTAGTGAATGAGTACTGCACCCTGGCTCTGGACTCTAGAATCTCCACTGTGATGTCTCAAGGATCTTGGTTTCTAGGAAGTCAGCTTTAGATTCACCAAGAAATGTTGTCTTTTTCTCTCTTCGTTATGTGGCCTCTGGAGCTAAAACTGAGGCTGTGTTAGAGATGCTGCTGAGGAAAAAGCTTGGTCAGGGAAGGGGAGCATGCTCTAAGTTGGCGAGGAACCCCAACTTCAGCCTGTTGGGGTTCAACTCTGCTTCCTGGAGTACTGCTGTGGGTATTTGCACTGTACACCATGGGTAAGCCAGACTTCTCCTTGGGGGAAGTGGTGGAGTGCTATGAGTCCCAACCTGGGTTCCAAGTCCATTTCTGTATGTGTCTTGGAGCTTTTTCTATCATGACTGTGCAGAGGTGGCCAGCTGCCCAACAAGCTTCCAGATGATGGGAGATTGGTCTCACTTCATCTGTCTCATTCGGAATAAGTAACAAACAGCTCCTCCACAAGTGCTCCATAAATACTTAGAACTGAGTCCTTGTCAAGGCTGTGAGATGCAGAGGCTTTCTTGTCTTTTTCTCTAATGCTTTTTCCCAATGGAGAAAGGTTCAGGAAAAAAAAAGGCACTTTGTATTTGAGTATCCTTCCTCCCTCTGCTATCATCACCCTCCTCCTTCCAGTGCCCCATCTAGCTCCCTCAGATATCCTCCTCTCCCTGTCTCTGCTGTCCCCATCCCCCTGGTTCTATAGTTCACAAACCCAATGTTGGCAGCATCCTCTCTGGGTCCCTTCCTTCCAAACCCCATCCCGGGGCAGGTTACTGGAGTGGAAGCTGTCTGGTCAACTTAATTCTGAGTTTGCTGTCATGCTCAGAGAGGAGATGGGGCTCACTTGCTCCTTTTCTCTCTTGCATGACTGGGCCTGTGCCACTGATGATGCTTGACACAGCCCCTCCCCGCCTGAAGGCAAGCCGTGCAGAGTCACTATATGTAGAACACACTCCGTGGCTTCTCTTCTCAGCAAAAGAGAGAGCCTTGCTTGGAGGGTTAGCCTGGTTAGGCAGCTGCCCTTTGGTGGCTGGGTACCTCCCATTTTCTCTGACCTAGCTTCTTGCATTTTAG
Seq C2 exon
GCTTCTTGCAAAGGACCAATAGCCTGGAAGAGAAGAGTCGTCTTGTGAGTGCCTTCAGGGAGAGGCAGGCCTCCAAGAACCTGCTTTCCTGTGAAAACAGTGACCCTGGTGCCCGCTTCCGGCGCACAGAGACGGACTTCTCCAACCTGTTTGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000007:ENSRNOT00000000008:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]