HsaINT1014122 @ hg38
Intron Retention
Gene
ENSG00000128683 | GAD1
Description
glutamate decarboxylase 1 [Source:HGNC Symbol;Acc:HGNC:4092]
Coordinates
chr2:170822087-170829633:+
Coord C1 exon
chr2:170822087-170822149
Coord A exon
chr2:170822150-170829474
Coord C2 exon
chr2:170829475-170829633
Length
7325 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
3' ss Seq
ACCAGCTTCTTGTGCCATAGGCT
3' ss Score
7.52
Exon sequences
Seq C1 exon
CGTACGATACCTGGTGCGGCGTGGCCCATGGATGCACCAGAAAACTGGGGCTCAAGATCTGCG
Seq A exon
GTAAGTGACAGGACCCACTGGGGCCCGGCTGGGTGGCGCGGCGGGCGGACCTTTGGGGCTTGGGAGACTGGGACGCAAGCGGAGGGGGATCCGGGCTCATGGGTCTGATTTTCTAATGTAATTACAGCCAGGACAGCCAGCGACCACGCTCCCCTACAGGCCCTGACCCTCCTCTGCCCGCCCCAGACCTGGTCCCCAGGGGTCTTTTCCTCTGGAGTCCCCAATCCCCAACACCCAGTGGAGCGAACGCCGGGTGCCCTGCCTGGGCGCAGAAGCGGGAGGAAAGCGCCCCCGCGCGGCAACCCCGCCTTCCTAGCCCTGCGCGCAAGCAGCTCCCACCCGGTGCCGTGCACTCTGCCTGCGCGTCCCAAAGGTCGCGTAGAAAAGGTGAACTGATCTGGCTTGCTGGAGAGCAGACCAAAGGCGGTGTATCTGCCTAAAGCTGTAGCTGACACGTCTCCCCCATCCCCTACATCATCGCCTACCCCTCACTCGCACCTCCACCCGCGCAGTCGGGTCGCATTGAAAGTGGTCTCTCCACCTTGAGGGGTTTTGCCCTGAGATGTCATAACGGATTCAAGTTTCTTTCTTTGGGGCTTCGGAGGCTAAAGAAAAGGATTGCCTGGAGCCCTCCATGGCCTGCCTGAGGGAGGCACGAGGGTTTGCCTGGCGCATCCTTGAAGGCGAGGAGGGAAGGGAAAGGGGACGAGCAGGGACGAGGAGCCGCAGGCGGCGAAAGAACCGGGAAGGAAGAAAATAGATCAGGGAGCTGGAGAGGAGAAAGAACTGCTCTCTGGAGACAGGAGGGTCTGAAATGAAAACGCCCAAAGGATGTAATTTTTTTAAAGGAAAAAGGGAGATTTGTTCGAAGGGACACAGCTGAGTGATTCTGGCTGAACAATGAGGCCTCACTTTCCTGGCTACATTTCACCGACTAAAATTCTCTAGCCTTATCGGGCCAGAAAATACGGATGTCCCCGGGCAGAGGTTGGAGAGGCGGGGGAAGATTAACGGGCGGCTTATTAAAGAGCCATCCGTCAGCTCCTGCGCGCGGGAGATAGCGGCAGAGCAGGCACGGGACACGCCCGCCCGCCCTAGCCCCGGAGCGCCGAGAGCCGCCCGCCGCCTGGGTGCTCTCTGCACCTGATCTTCCCAGCCTCCCTGGGTCCCGGGGCGAGGGCGGTGGCAGTTTGCAGTCAGAGCAGAGTGGCCGCTTTGGGGAACTACTCCCTTCCCTGCTTGGCCGCGCCGCGCCCTCCCTGCATTTCTGGGGCTCTGTCCTCTAGACCCTGGGACTCGGCGTTTAGGGAGGAACAGGCGCTCCATTCCTAGACCCAGCCATTTTCCACCGAAAGCCCAGCCCTGCCGCCGGGCGGCCTGGGAGTTTGGCCTTCTCCCCAGCGCAGGACGCCCGTGGGGCAAGGCCAGGGCTGCATCCCTGTGCTGGGGCAGCCGGCGGCCGCGGATCTTTGTTCTATAAATAGCCCCGTCCCACTCCCACCCCCACCTCCACCCCCACCCTGCCGCCATTCTGGGCTTAATGGCCCGTTTCGCGCCAGGTCCCTTCGGCGGCCGCAGCGCTCGGCTTCTGCAGCCGTCATTGTCATGCAGCCAGCCGGGCAGGCAGAACTGAGCGAGCCCTGGGCAGCCGAGGACAGGGTAGGGGCAGGCTCTGGGCGACGGCTCCTTACCAGCGGCGCCTGGCCTGCTGAGGGTGGGGGGCAGCCCTCATTCACCCCCATCCTGCCCCCTGCTGTCCCCTGCTCCTCTGGCTGCAGGCGCTCCACTTCCGCGGGAATAAAAGGTCTAAGTGCTTCTTATGGGGACATACCCGACGAGTTCAGAAAGGCTAAAGAGGCGGGAAAGAGTGGGGCTTCGCTGGGTCCGGAAATAGGGAAGCCGGAGTTGGCCTCCACTCCCCCTCCCCCACTGTCAGCCGAAGCTAGGAGGGAGAGCTCCTGGGGGCTACAGTCCTCAGAGAGTTTCCTCCCTGTGTCTGCTCCCCACAACCCATGGTAGTCTGTTGAGGAGAAATTGCCTTGGGCTAAAATGCCCCGCTTTTGGGGCCACAGGTTAGGAGGCTTCCCATTAGGTTTGATTGTGAAAGAAAACAAAACACCAAGATTTATTTTCCACACCTTGAGACAACTTTGGCTTTCCATTTTAATCTAGTGGAGGCAGAGTGCAGTCTTTTGTGTTGGCCCTGGGTCCACAGCTCCCTGCCTGCCTACACACACACACACACACACACACACACACACACACACACACCCCTCCCTTCATCCCTGGAGGGATGGACCTGGAGGGTCCCTTCTTGACTTGACACCATCCAGGTTGGTTTACCCTTTCACATTAAGAGAGCAGAGGAACTCATGGTCCTCTTCCCACTTCCAAACCCACTGCCCTGGATGACTCTCAGAAGCACCCTCAGTGCCTTGCCAAAATTCAACCCCCACCCACTCTCCCCCTGCCCTTCCCCAAAATCCACAGAATGAAGCTGCAAGGAAGGCCCTGGGCCCCACTAGTGGTAGCCCTGAAGGCAGAATTAGCTCTGGAGGCAGAATCCCCCAGGGAGAGTAATCAGCTAGAAGAAACCCATGGTCTTGCCAAGAGCTGGAGAGTGCTGCAGGCATGGTGGCATGACCTAAATACGATGAGTTGCAGGGATCCCTAAGTTCTGGCTCCAGGCTCTGCTAACTTCCCAGGGTGTCCTTGGGCTTCCATCACTTATCTCTTGCTGCCAACTACAGCCCCTGAGCTGTTTTATTTAGCCTACACTCGTGTGTGTGTGTGTGTGTGTGTATGTATGTGTGTGTAATTTTGTATCAAGTGCCAAACCTTAAAAATAGAGAGATTTCAAGTGCTCTCTTTTTCTGGTTTCTCTTGAAAAAACTTGGGGGTGGGCAATGGGGAGGGAAACATGGCAGGTGCTGTTAGCCCAAGAAAATCAGAAAAAGAAGTCATGGTGGCTCACATCTGTAATCCCAACACTTTGGGAGGCCAAGGTGGTAGGATCATTTGAGGCCAGGAGTTTGAGACTAGCCTGAGCAGCATAGGGAGACCCCATCTCTACAAAAACTTTCAAAAAATTAGCCAGGTGTGGTGGCCACATAGCTGCAGTCCTAGCTACTCAGGAGGATGAGGCAGGAGGATCGCTTGAGCCCAGGAGTTTGAAATTACAATGAGCTATGATGGCGCCACTACACTCCAGTCTGGACAACAGCAATACAGTATGACCCTGTCTCAAAAACAAACAAACAAATGAAAAAGAGCCCCTCCGTCTATGCATATGCAATTCCATGCCATAGCTTGGTGAACAGAGAATGTGCTGGGCTTCAGCTCCCACGTGCCCTGTTGGCCATAGGTGTTTATGCCATACACAGCTCAAAGCCCCACTTGGCAACAACTGGCTGGAGCCAGGTGCTTTCTAGCTACACATACCTGTGCGCACATGCACGCACACATACACATACACACTCTCTCACTGGGCCCCATAAGCCTTTGAGTTTGGCAGCAGGGGTGAGGAACCTGCAGCAGGAGCTCCCCTCAGCTCAGAGGTGGAGTCATGATTTTTCTCCCCTTGCGGCTGGCCAGTGTGCTAGCACCCAACCAAACACAACTGCAGCTTTGCCTCTCCTCTGCTTTCCTCTTTGCCTCTAAGAATGTAGAGCTCTGTGACCAGTTACCCACAGGCTTAAACTAGGTCCTCGAAGCTGGGGTGTAGAGCAAGAGGGAGTACACTCGGCTTCATTCTCTGGGACCCCTTCTTACAGGACCCCTTGCTAGCCAGGGAAATTGTCAAGGCACTGACCTCCATGTCATCCACCACCTCTTCATCCTTGGAGAAGCAGTTCCTTCCAGGGCCTCTCAGAGCCAAGGGAGGCCTGGTTCACCTACCTTTCTGAGGATCCCAGTATTTTAGAGAACAAACACCTTCCTAAACAAAGTGAAAGACATGTGACAATATATATTATATGTTTATATTAGCAAATTAATTGTTTTAACATAAATTATAATGCAGTGTAAGTGTGCTATTCATAAAATAATTACAGGATTTAGAGAGGATTCTGATTCCTAGTACATTACTGGAAGTGCAGCCCAAGGAATGGGATGCAGGTTTAAAGCCGTGTCGTAGGGCCGGGCGCAGTGGCTCGCACCTGTAATCCCAGCACTTTGGGAGGCCGAGACAGGTGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGACCAACATGGCGAAACCCCCATCTCTACTAAAAATACAAAAATTAGCCAGACGTGGTGGTAGGCACCTGTAATCCCAACTACTTGGGAGGCTGAGGCAAGAGAATCACTTGAACTTGGGAGCTGGAGGTTGTGGTGAGCCGAGATCATGCCACTGCACTCCAGCCTGGGTGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAGCTGTGGCATAACGATCGTTTCTCAGCCTCATGAGCGCATCTCTGGGAGAGCCTGTGTCAAAACCTCAAGCCGAGTTTCTGCTTCCTGCAGCTGCCCAGAGGGAAGGGGCTTCAAGGTGGGGAGACTCAGGGAGTGAGTCAGAAGCCTAAGCAGGCGTCGGGGACAACAGAGTGGAGGTTCAGCTGGGCAGGACCTCACTACATGAGGCCACATGGGTTTGGTCTTTCAAGTCTGGCAAATTCCACAGCTCAATGTTCTGGGATGAGAGGAGCAGTCTCAGAGTTCAGGTGCCATCTGATCCTGCATCCCTCTGGCAAATGAGTGCTGGCTCCTGGCTCTGGACTTTGAGGATTTGGAGGAGGAATTCAGGAAGTAGGCAAAGAGATATGGAAAAGGATACAATCCCATCTTTATACCCAAGTGTGGAGCTCTATTATAGTGTATTTCCCCCCTTCTCATGTCCTTTGGGCTTTAGTGATAAATGTAAAAGGTGCTGGGAGCAACAAAAAGCTTGGTGGCTCTGCTTTCCCCTTCTTCCCTCCAGAAATAGCCCCTGGCTCCCTTGTGTGGGAGGATTCTAATCACCGCAGCCCTCCCATGCATCCCCCCTTCTCCCACCCATCACAGTTGAATTGTAGTCCTGGGAAGCAAAGCTGAATTCTCCAGATTAACTTGCCTTTTTGCACCTCTTGGGACTTTCTTCCAAGTCTGCCTTGTGACACGTGTGACTCCGCAAGTTTCTTGGTATTTACAGAAACAGCTTTGGGGTCACCAAGAAGCTTAGAACCTTTTTCCTCTTTTCAGTGTGCTGCATTTTGGGCTAAGACTGAGGCTGAATTGAAGGAGGAGAAGCCAAAGGAAAGAGCAGACGTGCGGGCCAGGAGCCCCACAGGGGATGGTGGAGATGTGGAGGGAGTGTGCTCCACGCTGGCAGGTTCTCCTGCCCTTTTGGCTTAACCCTCTTTCCCCGTTTGCTGCCGGAGTTTGTCCTGCTCACCTTGGGCAGGAGAACTTTCCACTCACTCCGAGGGGCAGAGGTGAGGCACTGAGAATCCCGCCCTGGGCTCAGATCCCTCCTGTCATCTCTGTGGAGTTCTTGGATGACTAGTTTTATTCCAGCATTTGTCACCATCTGCCAGGCTTGTAGGCTCCTGGAGGGCAGGGGATCTGTCCCACTAGCTTTATCAGTCCCCAATCCTAGATGCTTAGCAAAGTGTTTTTGTACAACAGGTGCTCAATAAGTACTTATAGAATTAAATGGCAACACAGAAGATTGAAGCTTTTTTTTGTCTCACAGTACCTTCATTCAAGGAGAGGGGGTGGTGCAAGAAAAGCTGCATTCAGGTTTGCATTCAGAAAAATACCACTTACGTTCAACCCTGTGAGCATTACCTGGTGCTGGAGGAAAGTGTCTGCCCGAATCCTCTGTGTTGGACCTCACTACTTCTCCTTCTGCCATCCTCACCCCTCCTCCTTCTGCTGTCCTCCCTCTGCTGTCCTCACCCCTCCTCCTTCTGCTGTCCTCCCTCTGCTGTCCTCACCCTCCTCCCTCTGCTGTCCTCACCCTCCTCCCTCTGCTGTCCTCGCCCTCCTCTCTCTGCTGTCCTCACCTCTCCTCTCTCTGCTATCCTCACCCCTCCTCTTTCTGCTGTCCTCACCCCTCCTCTCTCTGCTGTCCTCACCCCTCCCCTTCCCTCTGCTGTCCTCACCCTCCTCCCTCTGCTGTCCTCACCCTCTTCCCTCTGCTGTCATCTTCCTCCCTCTGCTGTCCTCATCCCCTTCCCTCTGCTGTCCTCACCCTCCTCCCTCTGCTGTCCCCACCCTCCTCCCTCTGCTGTCCTCACCCCTCCTCTTCCCTCCGCGGTCCTCGCTGTCCTCCCTCTGCTGTCCTTGATCTCCTCCCTCTGCTGTCCTTGATCTCCTCCCTCTGCTGTCCTTGCTCTCCTCCCTCTGCTGTCCTCACCCTCCTACCTCTGCTGTCCTCACCGTCCTCCTCTGCTGTCCTCACCCCTCCTCTTCCCTCTGTTGTCCTTGCCCTCCTCCCTCTGCTGTCCTCACCCTCCTCCCTCTGCTGTCCTCACCCTCCTCCCCTGTTGTCCTCACCCTCCTCCTCTGTTGTCCACACCCTTCTCCCTCTGCTGTCCTCACCCTCCTCCCTCTGCTGTCCTCGCCCTCCTACCTCTGCTGTCCTCACCCTCCTCCCTCTGCTGTCCTCACCCCTCCTCTTCCCTCTGCCGTCCTCACCTCTCCTCCCTCTGCTGTCCTCGCCTTCCTCCCTCTGCGGTCCTTGCTCTCCTCCCTCTGTGGTCCTCACTCTCCTTCCTCTGCTGTCCTCACCCCTCCTCATCTCTCTGCTGTCCTCACCTCTCCTCCCTCTGCTATCCTCATCTTCCTCCCTCAGCTGTCCTCACCTCTCCTCCTCCCTCTGCTGTCCTCACCCTCCTCCCTCAGCTGTCCTCACCTCTCCTCCTACCTCTGCTGTTCTCTCCCCTCCTCCTTCTGCTTATACAGCCCATAAACAGTGCTGGCAGCATCTTCTCTGATTGTGTCTCCTCCTTTAAAGCCCTATCCTGGGGCTGGTCACTGGAGTGGAAGCTGTCCAACTTACTTAATTGTGAGTTCACTGTCACATTCAGAGAGGAGAACGGGCTTCACTTACTGTTTTTCTCTCTTGCATGACTGGGCCTCTGCCACTGATGACATTTGGCACTGCCCCCCTCCCTGCCTGAAGGCGAGCAGTGCCAGAGCCACTGTATTTAAAACACAGACACTCACTTCTTTTCTCAGGAGAAACAAGAGCCCTGCTTGGAGAGTTGATTCACTCTGCAGCTGACCCTCAGGGGCTGGGCAGTTTGCAGCACTCTCTCTGACCAGCTTCTTGTGCCATAG
Seq C2 exon
GCTTCTTGCAAAGGACCAACAGCCTGGAAGAGAAGAGTCGCCTTGTGAGTGCCTTCAAGGAGAGGCAATCCTCCAAGAACCTGCTTTCCTGTGAAAACAGCGACCGGGATGCCCGCTTCCGGCGCACAGAGACTGACTTCTCTAATCTGTTTGCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128683:ENST00000358196:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.002 A=NA C2=0.031
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains