HsaINT0068283 @ hg19
Intron Retention
Gene
ENSG00000106633 | GCK
Description
glucokinase (hexokinase 4) [Source:HGNC Symbol;Acc:4195]
Coordinates
chr7:44189359-44189663:-
Coord C1 exon
chr7:44189568-44189663
Coord A exon
chr7:44189459-44189567
Coord C2 exon
chr7:44189359-44189458
Length
109 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
3' ss Seq
GCTTCTGTGCTTCTTGGCAGGAC
3' ss Score
8.52
Exon sequences
Seq C1 exon
GGCATCCTTCTCAACTGGACCAAGGGCTTCAAGGCCTCAGGAGCAGAAGGGAACAATGTCGTGGGGCTTCTGCGAGACGCTATCAAACGGAGAGGG
Seq A exon
GTGAGGGGGCACCTGTACCTGCCGGGGGGGCTGCCCTGGGCCACCCACCCCAGCACTGCCTGCCTTTCTCCTTGGCTTCCAGCACTGCAGCTTCTGTGCTTCTTGGCAG
Seq C2 exon
GACTTTGAAATGGATGTGGTGGCAATGGTGAATGACACGGTGGCCACGATGATCTCCTGCTACTACGAAGACCATCAGTGCGAGGTCGGCATGATCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106633-GCK:NM_000162:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(14.9=100)
A:
NA
C2:
PF0034916=Hexokinase_1=PD(11.1=67.6),PF0372711=Hexokinase_2=PU(3.3=23.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATCCTTCTCAACTGGACC
R:
CACGATCATGCCGACCTCG
Band lengths:
195-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)