HsaINT0069495 @ hg19
Intron Retention
Gene
ENSG00000250571 | GLI4
Description
GLI family zinc finger 4 [Source:HGNC Symbol;Acc:4320]
Coordinates
chr8:144349607-144351690:+
Coord C1 exon
chr8:144349607-144349654
Coord A exon
chr8:144349655-144351529
Coord C2 exon
chr8:144351530-144351690
Length
1875 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
ATGGTTTTCATTTTCCCCAGGTC
3' ss Score
10.46
Exon sequences
Seq C1 exon
GGCCGGACACTTCCGTCCGGCGCGCGGCGTCCTCCTCCCGCTCGGAAG
Seq A exon
GTGAGTGGGCGCGGGCGGCGGCGGCGGCTCCGGGTGCCTGGGACCAGCCCAGTCCGAGCTCGTGCGCCGTACTCCGCGGTGCAGCCCTGCCCAGCCGGGCCGTGCGGCCCTTGCAGCCGCCGCTCGCCGTGACCTTGGCCTTGGGCCAAGCCCGGGGAGCGGGGTGGGCTCCTGGGGGTCGCGGAGCAGCAGCGGACCGCCCCGCCCAGCGGCCCTGGCGATAGCGGGTGTCCGTTCGCAGGGCGCCTTTCCCAGGCACCCAGTGACGGCAGCTGTCGTCATCGCCACTCTGCAGATGGGAAACTGAGGCCCGGAGGTCCCGCCGCTCCGGAGCGAGGAGCCGCCGGACCCCAGCGCCGCACCGCCGGGCGGACGCGCTCTGTGCCGAGCTCCCGGCGATTGGGTCCGCTCCCACGGGGCTGGGAACAGAGGGGCAGAGGATGCTTCCCCCGAGCCGCTGGCAGGAGTGCCCTTCCCCCTTCAGTCTGGAGCTCAGAGTTTGTGCGTCCCTGGGGGTGAAGGGGCGTCCACGCTGTGATGGTCGCCTCTGCTCAGTCCTGGGGGCCAAGCCAGGGTCGGGGTGATCGAGCAGGCCCTTTTACCAGGTGTCCCCAGTAAGTTAACTAAGTAACTTGAGATGTGACTTCAGGGTGGAGGACCTGCACCCAGTGGCCACCTACCTGGTGACCTGACCCTTCCCATCATTAGGGGATGGAGGCTGGCCCAGAAGCCGGGCACTGGGGTGGCGGCCGTGTGGGAGCTGCCTCTCCCACTTCCTCGAAGCAGGCACTGTCTGCTGTTCTTAGATCTGAGTATCCGTTAACTTTTGTCCTCTTTTCCCGTTCCTTTCTTCACTCCCTGCCCCAGATTAGGAGTTCCTACTCTATCACAGTATGAAAGAAAAGTCACTTTTCACATTGGACTCAAGCCGTTTTTGCAAAGTAAACTAAGAAGTGTCTTGGAGCCCTGAGTGAGTCTCCCAGTGCTGCTGCAGGGCTGGACTAGGGGATTCCAGCCTGCAGTCTCTGAGGGCTCTGTAGGGTCTGAGGAAGAGAGTTGCCCTCTGGAAACGTCTCTTCTCTGCTGTTCGGGAAAAACCTTATTAAGATTTCCTCCAAAACACTCATGCGCAGCAGGCATGGTTCGGTTTTCAGCCCTCCCACAGGGCCAGCAGCTGAGGTTTTTCTGGAAGACTCCCTATGCCTTTCTCTGGGGGAGGGGTGATGCCACGGGCTGGAAGGAGATGCCAGAGCCTCTGCTGGGACAGGAGCTTCGCTTCAGCCCCCACAGGCGTCTGCTGTGCCGCCCAGGCGGTGGCTGCTTCCTAAGCGCGCCTTCCAAGGCGTTACTCCTTTGCTGCTGCTGCTGCTGCTGCTGTTGTTTGAGTCTTGCTGTGTCTCCCAGGCTGGAGTGCAGGGGCGCCATCTCGGCTCACTGCAACCTCCACCTCCTGATTTCAAGCTGTTCTCCTGCCTCAGCTTCCCAAGTAGCTGGGATTACAGGTGCCCGCCACTGCGCCCAGCTAATTTTTATATTTTTAGTAGAGATGGGGTTTCACCATATTAGACAGGCTGGTCTCAAACTCCTGACCTCATGATCTACCCACCTCGGCCTCACAAAGTGCTGGGATTACAGGCATGAGCCACCGTCCCCAGCCACTCAAAGCGTTATTCCTTACTGAATAAATGTGCCAGGTCCCCCAACTGCCTCACCCCAGGCCTATGTGTCTCTGTGGGTTCATCCTCCATCCTTGCTCCTCCTGGAGTGGATAAACCTCCATCTCCCCTTGGAGAGCTGGCATGTTGCCTCCTCCTGCACCATCCCCCCGACATTCCTCCCAATCCCCTCATCTGCCATGGTTTTCATTTTCCCCAG
Seq C2 exon
GTCCCAGGTGTGACACCTTCAGCAGGTCTCAGGGAAGATGGCAGCCCTAGGGGACATTCAGGAGTCCCCTTCTGTCCCGTCCCCTGTCAGTCTCTCATCACCAGGGACACCTGGAACCCAGCACCACGAGCCTCAGCTTCACCTCCATGGGCATCAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000250571-GLI4:NM_138465:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)